Bo6g054750 (Brassica oleracea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 Bo6g054750 T179096_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.867 0.867
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g054750.1 FAR1 61 150

Links

Other FAR1 family TFs
Other Brassica oleracea TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra040696 Brassica rapa Bra040696 I 1.000
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.911
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.889
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.889
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.889
FAR1 Arabidopsis thaliana AT4G15090 D 0.867
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.867
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.867
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.867
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.856
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.856
PK04639.1 Cannabis sativa PK04639.1 I 0.856
TCM_002030 Theobroma cacao TCM_002030 I 0.844
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.844
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.844
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.844
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.833
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.833
Pm014858 Prunus mume Pm014858 I 0.833
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.833
mgf008053m Mimulus guttatus mgf008053m I 0.833
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.833
30106.m000672 Ricinus communis 30106.m000672 I 0.822
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.811