FAR1 (Arabidopsis thaliana)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 AT4G15090 T178989_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00		 Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a		 (Direct) (Direct)
FAR1
M06881_2.00		 Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G15090.1 FAR1 65 154
AT4G15090.2 FAR1 65 154
AT4G15090.3 FAR1 65 154
AT4G15090.4 FAR1 65 154
AT4G15090.5 FAR1 65 154

Links

Other FAR1 family TFs
Other Arabidopsis thaliana TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.944
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.922
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.922
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.922
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.922
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.920
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.909
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.900
TCM_002030 Theobroma cacao TCM_002030 I 0.889
30106.m000672 Ricinus communis 30106.m000672 I 0.889
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.889
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.885
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.878
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.878
mgf008053m Mimulus guttatus mgf008053m I 0.875
Bo6g054750 Brassica oleracea Bo6g054750 I 0.867
Bra040696 Brassica rapa Bra040696 I 0.867
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.867
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.867
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.867
Pm014858 Prunus mume Pm014858 I 0.867
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.867
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.856
PK04639.1 Cannabis sativa PK04639.1 I 0.856
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.811
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.711
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.700
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.700
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.700
Pm014859 Prunus mume Pm014859 I 0.700
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.700
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.700
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.700
MDP0000286803 Malus domestica MDP0000286803 I 0.700