PK08903.1 (Cannabis sativa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 PK08903.1 T181989_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.878 0.878
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK08903.1 FAR1 96 198

Links

Other FAR1 family TFs
Other Cannabis sativa TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.967
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.967
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.967
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.967
Pm014859 Prunus mume Pm014859 I 0.967
MDP0000286803 Malus domestica MDP0000286803 I 0.967
TCM_013043 Theobroma cacao TCM_013043 I 0.956
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.956
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.956
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.956
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.944
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.944
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.944
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.944
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.944
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.944
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.933
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.933
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.922
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.922
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.889
FHY3 Arabidopsis thaliana AT3G22170 D 0.878
mgf009829m Mimulus guttatus mgf009829m I 0.878
mgf014333m Mimulus guttatus mgf014333m I 0.878
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.867
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.867
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.867
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.856
Bra031330 Brassica rapa Bra031330 I 0.833
Bo5g098280 Brassica oleracea Bo5g098280 I 0.822
Bo1g105420 Brassica oleracea Bo1g105420 I 0.789
30106.m000672 Ricinus communis 30106.m000672 I 0.773
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.761
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.761
PK04639.1 Cannabis sativa PK04639.1 I 0.761
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.753
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.750
TCM_002030 Theobroma cacao TCM_002030 I 0.750
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.750
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.739
Pm014858 Prunus mume Pm014858 I 0.739
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.739
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.739
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.716
mgf008053m Mimulus guttatus mgf008053m I 0.716
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.705
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.705
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.700