CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J13372
(
Panicum virgatum
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03101 (FAR1)
IPR004330
Pavir.J13372
T181815_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J13372.1.p
FAR1
116
204
EFYNAYAEKVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKKGAKEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLAT
Pavir.J13372.1.p
FAR1
245
333
EFYSMYAGKIGFNVRRASMTVNTENVITRRMFVCSKEGFREKKRGVKRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQLGA
Pavir.J13372.2.p
FAR1
100
188
EFYNAYAEKVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKKGAKEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLAT
Pavir.J13372.2.p
FAR1
229
317
EFYSMYAGKIGFNVRRASMTVNTENVITRRMFVCSKEGFREKKRGVKRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQLGA
Pavir.J13372.3.p
FAR1
100
188
EFYNAYAEKVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKKGAKEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLAT
Pavir.J13372.3.p
FAR1
229
317
EFYSMYAGKIGFNVRRASMTVNTENVITRRMFVCSKEGFREKKRGVKRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQLGA
Pavir.J13372.4.p
FAR1
116
204
EFYNAYAEKVGFFVRRSTLWTTSKNIITRRTFVCSREGFREKKKGAKEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLAT
Pavir.J13372.4.p
FAR1
245
333
EFYSMYAGKIGFNVRRASMTVNTENVITRRMFVCSKEGFREKKRGVKRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQLGA
Links
Other
FAR1
family TFs
Other
Panicum virgatum
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AFUA_6G10140
Aspergillus fumigatus
CADAFUAG00002354
I
ANIA_07189
Aspergillus nidulans
CADANIAG00000265
D
NFIA_055920
Neosartorya fischeri
CADNFIAG00004495
I
PMAA_063340
Penicillium marneffei
PMAA_063340
I
PVAR5_3377
Byssochlamys spectabilis
PVAR5_3377
I
TSTA_082810
Talaromyces stipitatus
TSTA_082810
I