CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fkh-9 *(Caenorhabditis elegans)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	WBGene00001441	T188807_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fkh-9 M00663_2.00	Caenorhabditis elegans	NNVWHAAYAN	NTRTTDWBNN	PBM Narasimhan et al.(2015) pTH9957	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CBG14292 M01226_2.00	Caenorhabditis briggsae	VAWAACAW	WTGTTWTB	PBM Lambert et al.(2019) pTH11445	0.861	1.000
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00663_2.00	Forkhead	51	145	RPSLSYKDLIIEAIDRSPEKRLKLNEIYQVIRLLHPYYRHRPDQWGWQNSIRHNLSLHDCFVKLPLKQTSASGVVGHFWTVVPELSDKQTLRRRN

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
K03C7.2a	Forkhead	66	160	RPSLSYKDLIIEAIDRSPEKRLKLNEIYQVIRLLHPYYRHRPDQWGWQNSIRHNLSLHDCFVKLPLKQTSASGVVGHFWTVVPELSDKQTLRRRN
K03C7.2b	Forkhead	46	140	RPSLSYKDLIIEAIDRSPEKRLKLNEIYQVIRLLHPYYRHRPDQWGWQNSIRHNLSLHDCFVKLPLKQTSASGVVGHFWTVVPELSDKQTLRRRN

Links
Other Forkhead family TFs
Other *Caenorhabditis elegans* TFs