CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG14292
(
Caenorhabditis briggsae
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
CBG14292
T184763_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG14292
M01226_2.00
Caenorhabditis briggsae
VAWAACAW
WTGTTWTB
PBM
Lambert et al.(2019)
pTH11445
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fkh-9
M00663_2.00
Caenorhabditis elegans
NNVWHAAYAN
NTRTTDWBNN
PBM
Narasimhan et al.(2015)
pTH9957
0.861
1.000
For this family, TFs with SR scores >
0.664
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01226_2.00
Forkhead
51
144
RPSLSYKDLIIEAIDRSPEKRLKLNEIYQVIRLLHPYYRHRPDQWGWQNSIRHNLSLHDCFVKLPLKQTSASGVVGHFWTVVPELSDKQTLRRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG14292
Forkhead
52
145
RPSLSYKDLIIEAIDRSPEKRLKLNEIYQVIRLLHPYYRHRPDQWGWQNSIRHNLSLHDCFVKLPLKQTSASGVVGHFWTVVPELSDKQTLRRR
Links
Other
Forkhead
family TFs
Other
Caenorhabditis briggsae
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN20375
Caenorhabditis brenneri
CBN20375
I
0.861
CJA08800
Caenorhabditis japonica
CJA08800
I
0.861
CRE00363
Caenorhabditis remanei
CRE00363
I
0.861
fkh-9
Caenorhabditis elegans
WBGene00001441
D
0.861
DICVIV_10547
Dictyocaulus viviparus
DICVIV_10547
I
0.861
OESDEN_00259
Oesophagostomum dentatum
OESDEN_00259
I
0.861
WUBG_05169
Wuchereria bancrofti
WUBG_05169
I
0.855
Bm4783
Brugia malayi
Bm4783
I
0.855
Bm8986
Brugia malayi
Bm8986
I
0.855
LOAG_12342
Loa loa
LOAG_12342
I
0.855
WBGene00240171
Onchocerca volvulus
WBGene00240171
I
0.855
ASU_01844
Ascaris suum
ASU_01844
I
0.855
EEL_0001062601
Elaeophora elaphi
EEL_0001062601
I
0.855
nDi.2.2.2.g08148
Dirofilaria immitis
nDi.2.2.2.g08148
I
0.855
nLs.2.1.2.g09806
Litomosoides sigmodontis
nLs.2.1.2.g09806
I
0.855
TCLT_0000649001
Thelazia callipaeda
TCLT_0000649001
I
0.855
L889_g19578
Steinernema feltiae
L889_g19578
I
0.851
L898_g14202
Steinernema monticolum
L898_g14202
I
0.851
SMUV_0001043901
Syphacia muris
SMUV_0001043901
I
0.851
HPBE_0000630601
Heligmosomoides bakeri
HPBE_0000630601
I
0.836
TELCIR_11030
Teladorsagia circumcincta
TELCIR_11030
I
0.836
ACOC_0000915001
Angiostrongylus costaricensis
ACOC_0000915001
I
0.835
L596_g16187
Steinernema carpocapsae
L596_g16187
I
0.827
L892_g2712
Steinernema scapterisci
L892_g2712
I
0.827
BXY_1419700
Bursaphelenchus xylophilus
BXY_1419700
I
0.825
RSKR_0000258500
Rhabditophanes kr3021
RSKR_0000258500
I
0.823
GPLIN_000643600
Globodera pallida
GPLIN_000643600
I
0.821
SPAL_0000170000
Strongyloides papillosus
SPAL_0000170000
I
0.820
Minc17526
Meloidogyne incognita
Minc17526
I
0.796
augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0
I
0.796
augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0
I
0.796
MhA1_Contig2150.frz3.gene5
Meloidogyne hapla
MhA1_Contig2150.frz3.gene5
I
0.796
PTRK_0001396400
Parastrongyloides trichosuri
PTRK_0001396400
I
0.796
SSTP_0001187300
Strongyloides stercoralis
SSTP_0001187300
I
0.796
NECAME_09893
Necator americanus
NECAME_09893
I
0.773