CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

augustus_masked-nMf.1.1.scaf00690-processed-gene-0.2 *(Meloidogyne floridensis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	augustus_masked-nMf.1.1.scaf00690-processed-gene-0.2	T190336_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.778	0.802
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.778	0.802
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.778	0.802
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.778	0.802
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.778	0.802
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.778	0.802
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.778	0.802
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.753	0.791
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.753	0.791
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.753	0.791
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.753	0.791
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.753	0.791
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.753	0.791
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.753	0.791
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.753	0.791
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.753	0.791
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.748	0.767
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.742	0.674
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.742	0.674
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.734	0.779
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.734	0.779
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.734	0.779
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.734	0.779
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.729	0.744
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.728	0.640
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.728	0.640
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.728	0.640
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.728	0.628
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.713	0.616
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.708	0.570
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.708	0.570
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.705	0.686
FOXL2 M04847_2.00	Homo sapiens	NVBGHMAACAH	DTGTTKDCVBN	SELEX Yin et al.(2017) FOXL2_FL_HT-SELEX	0.703	0.628
Foxl2 M09112_2.00	Mus musculus	DWDWRTAAACA	TGTTTAYWHWH	Misc Kulakovskiy et al.(2013) FOXL2_MOUSE.H11MO.0.C	0.703	0.628
FOXL2 M10560_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q2	0.703	0.628
FOXL2 M10561_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q5	0.703	0.628
FOXL2 M04848_2.00	Homo sapiens	HVCGWMAACAH	DTGTTKWCGBD	SELEX Yin et al.(2017) FOXL2_FL_Methyl-HT-SELEX	0.703	0.628
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.703	0.570
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.703	0.570
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.688	0.616
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.688	0.616
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.688	0.616
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.688	0.616
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.688	0.616
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.688	0.616
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.688	0.616
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.688	0.616
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.688	0.616
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.671	0.605
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.671	0.605
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.671	0.605
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.671	0.605
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.671	0.605
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.671	0.605
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.671	0.605
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.671	0.605
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.671	0.605
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.671	0.605
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.671	0.605
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.671	0.593
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.671	0.593
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.671	0.593
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.671	0.593
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.671	0.593
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
augustus_masked-nMf.1.1.scaf00690-processed-gene-0.2-mRNA-1	Forkhead	105	194	KPPFSYIALISMAIVNSKQRRLTLSQICDFIMDKFEYYREKFPAWQNSIRHNLSLNDCFVKCPREPGNPGKGNYWALDPAAEDMFDNGSF

Links
Other Forkhead family TFs
Other *Meloidogyne floridensis* TFs

1002 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30204.m001803	Ricinus communis	30204.m001803	N	0.000
AMTR_s00049p00034730	Amborella trichopoda	AMTR_s00049p00034730	N	0.000
Aquca_108_00003	Aquilegia coerulea	Aquca_108_00003	N	0.000
ABI3	Arabidopsis thaliana	AT3G24650	N	0.000
BGIOSGA000276	Oryza indica	BGIOSGA000276	N	0.000
Bo3g083650	Brassica oleracea	Bo3g083650	N	0.000
Bostr.19424s0154	Boechera stricta	Bostr.19424s0154	N	0.000
Bra013248	Brassica rapa	Bra013248	N	0.000
BRADI2G58390	Brachypodium distachyon	BRADI2G58390	N	0.000
Cagra.2774s0002	Capsella grandiflora	Cagra.2774s0002	N	0.000
Carubv10016094m.g	Capsella rubella	Carubv10016094m.g	N	0.000
cassava2971.m1	Manihot esculenta	cassava2971.m1	N	0.000
cassava34238.m1	Manihot esculenta	cassava34238.m1	N	0.000
Ca_21518	Cicer arietinum	Ca_21518	N	0.000
chr1.CM0147.220.nd	Lotus japonicus	chr1.CM0147.220.nd	N	0.000
Ciclev10019039m.g	Citrus clementina	Ciclev10019039m.g	N	0.000
Cla015213	Citrullus lanatus	Cla015213	N	0.000
Cucsa.078480	Cucumis sativus	Cucsa.078480	N	0.000
Eucgr.H00815	Eucalyptus grandis	Eucgr.H00815	N	0.000
evm.TU.supercontig_8.187	Carica papaya	evm.TU.supercontig_8.187	N	0.000
F775_43744	Aegilops tauschii	F775_43744	N	0.000
ABI3	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_3002399	N	0.000
gene17562-v1.0-hybrid	Fragaria vesca	gene17562-v1.0-hybrid	N	0.000
GLYMA08G47240	Glycine max	GLYMA08G47240	N	0.000
GLYMA18G38490	Glycine max	GLYMA18G38490	N	0.000
Gorai.001G184300	Gossypium raimondii	Gorai.001G184300	N	0.000
GRMZM2G133398	Zea mays	GRMZM2G133398	N	0.000
GSMUA_Achr7G23040_001	Musa acuminata	GSMUA_Achr7G23040_001	N	0.000
GSMUA_AchrUn_randomG18520_001	Musa acuminata	GSMUA_AchrUn_randomG18520_001	N	0.000
LPERR01G35880	Leersia perrieri	LPERR01G35880	N	0.000
Lus10011888.g	Linum usitatissimum	Lus10011888.g	N	0.000
Lus10022820.g	Linum usitatissimum	Lus10022820.g	N	0.000
MDP0000166580	Malus domestica	MDP0000166580	N	0.000
MDP0000309680	Malus domestica	MDP0000309680	N	0.000
mgf023017m	Mimulus guttatus	mgf023017m	N	0.000
MLOC_69727	Hordeum vulgare	MLOC_69727	N	0.000
MTR_7g059330	Medicago truncatula	MTR_7g059330	N	0.000
OB01G50120	Oryza brachyantha	OB01G50120	N	0.000
OBART01G41410	Oryza barthii	OBART01G41410	N	0.000
OGLUM01G45580	Oryza glumaepatula	OGLUM01G45580	N	0.000
OLONG_001180	Oryza longistaminata	OLONG_001180	N	0.000
OMERI01G38380	Oryza meridionalis	OMERI01G38380	N	0.000
ONIVA01G46510	Oryza nivara	ONIVA01G46510	N	0.000
orange1.1g038867m.g	Citrus sinensis	orange1.1g038867m.g	N	0.000
ORGLA01G0353400	Oryza glaberrima	ORGLA01G0353400	N	0.000
ORUFI01G44750	Oryza rufipogon	ORUFI01G44750	N	0.000
VP1	Oryza sativa	OS01G0911700	N	0.000
Pavir.Ea03476	Panicum virgatum	Pavir.Ea03476	N	0.000
Pavir.J03563	Panicum virgatum	Pavir.J03563	N	0.000
PDK_20s1318001g001	Phoenix dactylifera	PDK_20s1318001g001	N	0.000
PGSC0003DMG400020155	Solanum tuberosum	PGSC0003DMG400020155	N	0.000
Pm020417	Prunus mume	Pm020417	N	0.000
POPTR_0002s25330	Populus trichocarpa	POPTR_0002s25330	N	0.000
PRUPE_ppa001608mg	Prunus persica	PRUPE_ppa001608mg	N	0.000
SapurV1A.0937s0080	Salix purpurea	SapurV1A.0937s0080	N	0.000
Sb03g043480	Sorghum bicolor	Sb03g043480	N	0.000
Si000497m.g	Setaria italica	Si000497m.g	N	0.000
Solyc06g083590.2	Solanum lycopersicum	Solyc06g083590.2	N	0.000
Solyc06g083600.1	Solanum lycopersicum	Solyc06g083600.1	N	0.000
TCM_003056	Theobroma cacao	TCM_003056	N	0.000
Thhalv10003110m.g	Eutrema salsugineum	Thhalv10003110m.g	N	0.000
TRAES3BF066400010CFD_g	Triticum aestivum	TRAES3BF066400010CFD_g	N	0.000
ABI3	Vitis vinifera	VIT_07s0005g05400	N	0.000

augustus_masked-nMf.1.1.scaf00690-processed-gene-0.2 (Meloidogyne floridensis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1002 Related TFs

augustus_masked-nMf.1.1.scaf00690-processed-gene-0.2 **(Meloidogyne floridensis)
Forkhead**