Bra013805 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra013805 T191955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.867 0.972
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.810 0.806
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.810 0.778
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.810 0.750
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.810 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013805.1-P GATA 175 212

Links

Other GATA family TFs
Other Brassica rapa TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007260 Calypte anna Aan_R007260 I
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
GTF2I Bos taurus ENSBTAG00000009780 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Callithrix jacchus ENSCJAG00000016182 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
GTF2I Equus caballus ENSECAG00000020289 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
GTF2I Felis catus ENSFCAG00000002617 I
GTF2I Homo sapiens ENSG00000263001 D
GTF2I Gallus gallus ENSGALG00000021665 I
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I
Gtf2i Mus musculus ENSMUSG00000060261 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Sorex araneus ENSSARG00000011458 I
GTF2I Sus scrofa ENSSSCG00000007721 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
GTF2I Tursiops truncatus ENSTTRG00000014454 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
Tal_R004165 Tyto alba Tal_R004165 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
XP_002932326 Xenopus tropicalis XP_002932326 I