Bra033533 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra033533 T191978_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.823 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.803 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.803 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033533.1-P GATA 40 75

Links

Other GATA family TFs
Other Brassica rapa TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004824 Oryza indica BGIOSGA004824 N
BGIOSGA024590 Oryza indica BGIOSGA024590 N
BGIOSGA025449 Oryza indica BGIOSGA025449 N
GRMZM2G121570 Zea mays GRMZM2G121570 N
LPERR01G32380 Leersia perrieri LPERR01G32380 N
OB01G46450 Oryza brachyantha OB01G46450 N
OB07G17380 Oryza brachyantha OB07G17380 N
OBART01G37720 Oryza barthii OBART01G37720 N
OBART07G07440 Oryza barthii OBART07G07440 N
OBART07G07450 Oryza barthii OBART07G07450 N
OBART07G08680 Oryza barthii OBART07G08680 N
OGLUM07G07150 Oryza glumaepatula OGLUM07G07150 N
OGLUM07G07870 Oryza glumaepatula OGLUM07G07870 N
OLONG_012136 Oryza longistaminata OLONG_012136 N
OLONG_021151 Oryza longistaminata OLONG_021151 N
OLONG_023640 Oryza longistaminata OLONG_023640 N
OMERI07G07070 Oryza meridionalis OMERI07G07070 N
ONIVA01G42540 Oryza nivara ONIVA01G42540 N
ONIVA07G05980 Oryza nivara ONIVA07G05980 N
ONIVA07G05990 Oryza nivara ONIVA07G05990 N
ONIVA07G07540 Oryza nivara ONIVA07G07540 N
OPUNC01G36560 Oryza punctata OPUNC01G36560 N
OPUNC07G07180 Oryza punctata OPUNC07G07180 N
OPUNC07G08180 Oryza punctata OPUNC07G08180 N
ORGLA01G0315200 Oryza glaberrima ORGLA01G0315200 N
ORGLA07G0062800 Oryza glaberrima ORGLA07G0062800 N
ORGLA07G0073600 Oryza glaberrima ORGLA07G0073600 N
ORUFI01G41050 Oryza rufipogon ORUFI01G41050 N
ORUFI07G07450 Oryza rufipogon ORUFI07G07450 N
ORUFI07G08780 Oryza rufipogon ORUFI07G08780 N
OS01G0855400 Oryza sativa OS01G0855400 N
Sb01g013830 Sorghum bicolor Sb01g013830 N