PGSC0003DMG400004624 (Solanum tuberosum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 PGSC0003DMG400004624 T194704_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.861
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.861
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400011778 GATA 20 55
PGSC0003DMT400011779 GATA 33 68
PGSC0003DMT400011780 GATA 1 18

Links

Other GATA family TFs
Other Solanum tuberosum TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG007355.2 Alligator sinensis Alligator_sinensis_CCG007355.2 N 0.000
Brh_R005208 Buceros rhinoceros Brh_R005208 I 0.000
Cmyd_10000491 Chelonia mydas Cmyd_10000491 I 0.000
ENSAMEG00000016851 Ailuropoda melanoleuca ENSAMEG00000016851 I 0.000
ENSAMXG00000007016 Astyanax mexicanus ENSAMXG00000007016 N 0.000
TP53 Bos taurus ENSBTAG00000001069 I 0.000
ENSBTAP00000001420-D1 Bos grunniens ENSBTAP00000001420-D1 I 0.000
tp53 Danio rerio ENSDARG00000035559 I 0.000
TP53 Dasypus novemcinctus ENSDNOG00000005252 I 0.000
TP53 Erinaceus europaeus ENSEEUG00000014573 I 0.000
TP53 Felis catus ENSFCAG00000009623 I 0.000
tp53 Gasterosteus aculeatus ENSGACG00000019378 N 0.000
ENSGMOG00000007755 Gadus morhua ENSGMOG00000007755 N 0.000
ENSLACG00000014014 Latimeria chalumnae ENSLACG00000014014 N 0.000
ENSLOCG00000013832 Lepisosteus oculatus ENSLOCG00000013832 N 0.000
ENSMEUG00000013135 Macropus eugenii ENSMEUG00000013135 I 0.000
ENSMPUG00000009017 Mustela putorius furo ENSMPUG00000009017 I 0.000
ENSOARG00000015571 Ovis aries ENSOARG00000015571 I 0.000
ENSONIG00000018962 Oreochromis niloticus ENSONIG00000018962 N 0.000
tp53 Oryzias latipes ENSORLG00000006390 N 0.000
TP53 Procavia capensis ENSPCAG00000012725 I 0.000
ENSPSIG00000013302 Pelodiscus sinensis ENSPSIG00000013302 I 0.000
TP53 Sorex araneus ENSSARG00000006206 I 0.000
ENSSHAG00000015510 Sarcophilus harrisii ENSSHAG00000015510 I 0.000
TP53 Sus scrofa ENSSSCG00000017950 I 0.000
ENSSTOG00000022774 Ictidomys tridecemlineatus ENSSTOG00000022774 I 0.000
tp53 Takifugu rubripes ENSTRUG00000012107 N 0.000
TP53 Tursiops truncatus ENSTTRG00000010250 I 0.000
Pvit_02042 Pogona vitticeps Pvit_02042 N 0.000
Tal_R007660 Tyto alba Tal_R007660 I 0.000
tp53 Xenopus tropicalis XB-GENE-484286 N 0.000
tp53.L Xenopus laevis XB-GENE-6252168 N 0.000