CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf12440-snap-gene-0.3
(
Meloidogyne floridensis
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
maker-nMf.1.1.scaf12440-snap-gene-0.3
T197619_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf12440-snap-gene-0.3-mRNA-1
GATA
192
226
CFNCWFNQTFQWYTYLKGQYLCHSCFIYKEKLNRK
Links
Other
GATA
family TFs
Other
Meloidogyne floridensis
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-nMf.1.1.scaf06571-snap-gene-0.8
Meloidogyne floridensis
maker-nMf.1.1.scaf06571-snap-gene-0.8
N
0.828
Minc16857
Meloidogyne incognita
Minc16857
N
0.828
Minc17602
Meloidogyne incognita
Minc17602
N
0.828
snap_masked-nMf.1.1.scaf17427-processed-gene-0.1
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf17427-processed-gene-0.1
N
0.828