nLs.2.1.2.g04395 (Litomosoides sigmodontis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 nLs.2.1.2.g04395 T197704_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG13549
M01231_2.00 		Caenorhabditis briggsae
NTGATAAN
NTTATCAN		 PBM
Lambert et al.(2019)
pTH11492 		0.856 0.886
elt-6
M00666_2.00 		Caenorhabditis elegans
NTGATAAN
NTTATCAN		 PBM
Narasimhan et al.(2015)
pTH10707 		0.851 0.857
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t04395-RA GATA 268 302

Links

Other GATA family TFs
Other Litomosoides sigmodontis TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA06G0118700 Oryza glaberrima ORGLA06G0118700 N
OS06G0328650 Oryza sativa OS06G0328650 N
Pavir.Ab02036 Panicum virgatum Pavir.Ab02036 N
Pavir.Da02063 Panicum virgatum Pavir.Da02063 N
Pavir.Eb02430 Panicum virgatum Pavir.Eb02430 N
Pavir.J30108 Panicum virgatum Pavir.J30108 N