Tfcp2 (Rattus norvegicus)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSRNOG00000032395 T199218_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSGALG00000002235
M02030_2.00 		Gallus gallus
AACCGGTTA
TAACCGGTT		 PBM
Weirauch et al.(2014)
pTH8565 		0.976 0.976
TFCP2L1
M04885_2.00 		Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX 		0.843 0.843
TFCP2L1
M10609_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP9_01 		0.843 0.843
TFCP2L1
M04886_2.00 		Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX 		0.843 0.843
Tcfcp2l1
M08029_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1 		0.805 0.805
Tcfcp2l1
M08030_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1 		0.805 0.805
Tcfcp2l1
M09127_2.00 		Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH		 Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C 		0.805 0.805
UBP1
M04893_2.00 		Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN		 SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX 		0.795 0.795
UBP1
M10614_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6_01 		0.795 0.795
UBP1
M10615_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6 		0.795 0.795
UBP1
M04894_2.00 		Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH		 SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX 		0.795 0.795
TFCP2
M03074_2.00 		Homo sapiens
DAWCCGGTTY
RAACCGGWTH		 SELEX
Jolma et al.(2013)
TFCP2_1 		0.742 0.742
TFCP2
M03075_2.00 		Homo sapiens
WCCGGWWHDAWCYGGW
WCCRGWTHDWWCCGGW		 SELEX
Jolma et al.(2013)
TFCP2_2 		0.742 0.742
TFCP2
M04889_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX 		0.742 0.742
TFCP2
M04891_2.00 		Homo sapiens
AWCYGGTTHNDACCGGTW
WACCGGTHNDAACCRGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX 		0.742 0.742
TFCP2
M10610_2.00 		Homo sapiens
CTKGKTHKDGC
GCHMDAMCMAG		 Transfac
Matys et al.(2006)
V$CP2_01 		0.742 0.742
TFCP2
M10611_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_02 		0.742 0.742
TFCP2
M10612_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q4 		0.742 0.742
TFCP2
M10613_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q6 		0.742 0.742
TFCP2
M04890_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX 		0.742 0.742
TFCP2
M04892_2.00 		Homo sapiens
AWCCGGWTNDAWCCGGTT
AACCGGWTHNAACCGGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000037251 Grainyhead 44 260
ENSRNOP00000068740 Grainyhead 44 260

Links

Other Grainyhead family TFs
Other Rattus norvegicus TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
22143_YPL038W Saccharomyces mikatae 22143_YPL038W I
23564_YPL038W Saccharomyces paradoxus 23564_YPL038W I
25018_YPL038W Saccharomyces bayanus 25018_YPL038W I
3987_YDR253C Saccharomyces mikatae 3987_YDR253C I
4678_YDR253C Saccharomyces paradoxus 4678_YDR253C I
BN7_573 Wickerhamomyces ciferrii BN7_573 I
KAFR_0E02900 Kazachstania africana KAFR_0E02900 I
KLLA0_D11902g Kluyveromyces lactis KLLA0_D11902g I
KLTH0E11330g Lachancea thermotolerans KLTH0E11330g I
KLTH0E11330g Kluyveromyces thermotolerans KLTH0E11330g I
Kwal_11824 Kluyveromyces waltii Kwal_11824 I
LALA0_S04e04720g Lachancea lanzarotensis LALA0_S04e04720g I
NCAS_0B02480 Naumovozyma castellii NCAS_0B02480 I
NCAS_0C02430 Naumovozyma castellii NCAS_0C02430 I
NDAI_0C05210 Naumovozyma dairenensis NDAI_0C05210 I
SAKL0H11440g Lachancea kluyveri SAKL0H11440g I
Scas_Contig568.5 Saccharomyces castellii Scas_Contig568.5 I
Scas_Contig721.56 Saccharomyces castellii Scas_Contig721.56 I
SKUD_139603 Saccharomyces kudriavzevii SKUD_139603 I
SKUD_191509 Saccharomyces kudriavzevii SKUD_191509 I
SU7_3598 Saccharomyces arboricola SU7_3598 I
TPHA_0L01320 Tetrapisispora phaffii TPHA_0L01320 I
MET32 Saccharomyces cerevisiae YDR253C D
MET31 Saccharomyces cerevisiae YPL038W D
ZBAI_00597 Zygosaccharomyces bailii ZBAI_00597 I
ZBAI_05898 Zygosaccharomyces bailii ZBAI_05898 I
ZYRO0F08162g Zygosaccharomyces rouxii ZYRO0F08162g I