CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo5g149920
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo5g149920
T199938_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.867
0.867
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g149920.1
GRAS
178
540
LVHALVACAEAIQQQDLNLADALVKSVGTLAASQAGAMGKVATYFAQGLARRIYAADLSGGSSVGPSFEEALQMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALAVRPGGPPSFRLTGVGPPQTESSDSLQQLGWKLAQFAQAIGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHKLLNRSGSVEKLLTTVKTVKPSIITMVEQEANHNGVVFLDRFNEALHYYSSLFDSLEDSYTLPSQDRVMSEVYLGRQIVNVVAAEGTDRVERHETLAQWKVRMGSVGFDPVPLGSSAFKQASMLLSVFAGGDGYRVEENDGCLMLGWQTRPLIATSAWK
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI1G11090
Brachypodium distachyon
BRADI1G11090
N
0.000
LPERR03G26000
Leersia perrieri
LPERR03G26000
N
0.000
MLOC_67940
Hordeum vulgare
MLOC_67940
N
0.000
OLONG_002563
Oryza longistaminata
OLONG_002563
N
0.000
SLR1
Oryza sativa
OS03G0707600
N
0.000
Pavir.Ia00840
Panicum virgatum
Pavir.Ia00840
N
0.000
Pavir.Ib04357
Panicum virgatum
Pavir.Ib04357
N
0.000
SapurV1A.0102s0220
Salix purpurea
SapurV1A.0102s0220
N
0.000
Sb01g010660
Sorghum bicolor
Sb01g010660
N
0.000
Traes_4AL_77F4CC833
Triticum aestivum
Traes_4AL_77F4CC833
N
0.000
TRIUR3_18790
Triticum urartu
TRIUR3_18790
N
0.000