CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra002564
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra002564
T199969_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra002564.1-P
GRAS
1
304
MVDILKAYKLFVHVCPIYVADYFAANKSIYELALSSTKLHIIDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGFRPSDRVEETGRRLKRFCDMFNVPFEFNFIAKKWESITLDEITITPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMTRFKEALFHFSSLFDMFDTTIQAEDEYKNRALLERELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFRPAMISKEILKGAKEIVRKRYHKDFLIDGDGNWMLQGWKGRVIYAFSCWK
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL11
Arabidopsis thaliana
AT5G59450
N
0.732
Bo3g132720
Brassica oleracea
Bo3g132720
N
0.709
Bo9g139410
Brassica oleracea
Bo9g139410
N
0.797
Bostr.26833s0299
Boechera stricta
Bostr.26833s0299
N
0.917
Cagra.1317s0069
Capsella grandiflora
Cagra.1317s0069
N
0.743
Carubv10028208m.g
Capsella rubella
Carubv10028208m.g
N
0.743
fgenesh2_kg.8__1893__AT5G59450.1
Arabidopsis lyrata
fgenesh2_kg.8__1893__AT5G59450.1
N
0.732
Thhalv10002455m.g
Eutrema salsugineum
Thhalv10002455m.g
N
0.767
Thhalv10013016m.g
Eutrema salsugineum
Thhalv10013016m.g
N
0.759