CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.3264s0007
(
Capsella grandiflora
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cagra.3264s0007
T202329_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3264s0007.1.p
GRAS
252
630
FRTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLEGSTGPMIQTYYNAITSLKETASDTLKAYRVYLSSSPFVTLMYFFSFRMILDKSKDASVLHIVDFGILYGFQWPMFIQYISRRQDAPRKLRITGIELPQRGFRPTERIEETGRRLAEYCKRFNVPFEYKAIASQHWETIRIEDLDIRPNEVLAVTAGVRLKNLQDETGSEENCPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNEERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRTVRAGFRQEPIRADMVELFRERLKKWGYHKDFVVDENSKWLLQGWKGRTLYASSCWV
Links
Other
GRAS
family TFs
Other
Capsella grandiflora
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT1G07520
Arabidopsis thaliana
AT1G07520
N
0.706
SCL34
Arabidopsis thaliana
AT2G29065
N
0.856
Bo4g065830
Brassica oleracea
Bo4g065830
N
0.880
Bo5g008260
Brassica oleracea
Bo5g008260
N
0.701
Bostr.25219s0208
Boechera stricta
Bostr.25219s0208
N
0.703
Bostr.27991s0168
Boechera stricta
Bostr.27991s0168
N
0.933
Bra028391
Brassica rapa
Bra028391
N
0.879
Cagra.1671s0372
Capsella grandiflora
Cagra.1671s0372
N
0.714
Carubv10010943m.g
Capsella rubella
Carubv10010943m.g
N
0.714
Carubv10022816m.g
Capsella rubella
Carubv10022816m.g
N
1.000
Thhalv10006948m.g
Eutrema salsugineum
Thhalv10006948m.g
N
0.709
Thhalv10016365m.g
Eutrema salsugineum
Thhalv10016365m.g
N
0.917