CGI_10025814 (Crassostrea gigas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CGI_10025814 T205887_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.743 0.522
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.743 0.522
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.743 0.522
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.743 0.522
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.743 0.522
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.743 0.522
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.743 0.522
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.743 0.522
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.743 0.522
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.691 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.691 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.691 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC26357 Homeodomain 45 90

Links

Other Homeodomain family TFs
Other Crassostrea gigas TFs

1226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N 0.000
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N 0.000
FIT Arabidopsis thaliana AT2G28160 N 0.000
Bo3g040310 Brassica oleracea Bo3g040310 N 0.000
Bo4g071850 Brassica oleracea Bo4g071850 N 0.000
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N 0.000
Bra000495 Brassica rapa Bra000495 N 0.000
Bra011972 Brassica rapa Bra011972 N 0.000
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N 0.000
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N 0.000
Carubv10023654m.g Capsella rubella Carubv10023654m.g N 0.000
cassava28523.m1 Manihot esculenta cassava28523.m1 N 0.000
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N 0.000
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N 0.000
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N 0.000
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N 0.000
Cla008847 Citrullus lanatus Cla008847 N 0.000
Cucsa.385700 Cucumis sativus Cucsa.385700 N 0.000
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N 0.000
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N 0.000
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N 0.000
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N 0.000
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N 0.000
GLYMA11G19850 Glycine max GLYMA11G19850 N 0.000
GLYMA12G30240 Glycine max GLYMA12G30240 N 0.000
GLYMA13G39650 Glycine max GLYMA13G39650 N 0.000
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N 0.000
GRMZM2G107672 Zea mays GRMZM2G107672 N 0.000
GRMZM2G173521 Zea mays GRMZM2G173521 N 0.000
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N 0.000
LPERR04G07210 Leersia perrieri LPERR04G07210 N 0.000
Lus10016151.g Linum usitatissimum Lus10016151.g N 0.000
MLOC_6707 Hordeum vulgare MLOC_6707 N 0.000
MTR_2g084280 Medicago truncatula MTR_2g084280 N 0.000
OB04G17410 Oryza brachyantha OB04G17410 N 0.000
OBART04G10120 Oryza barthii OBART04G10120 N 0.000
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N 0.000
OLONG_016577 Oryza longistaminata OLONG_016577 N 0.000
ONIVA04G07960 Oryza nivara ONIVA04G07960 N 0.000
OPUNC04G08160 Oryza punctata OPUNC04G08160 N 0.000
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N 0.000
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N 0.000
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N 0.000
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N 0.000
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N 0.000
OS04G0381700 Oryza sativa OS04G0381700 N 0.000
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N 0.000
Pavir.J28741 Panicum virgatum Pavir.J28741 N 0.000
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N 0.000
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N 0.000
PK26582.1 Cannabis sativa PK26582.1 N 0.000
Pm001154 Prunus mume Pm001154 N 0.000
FIT1 Populus trichocarpa POPTR_0009s01100 N 0.000
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N 0.000
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N 0.000
Sb06g012030 Sorghum bicolor Sb06g012030 N 0.000
Si010468m.g Setaria italica Si010468m.g N 0.000
Si010533m.g Setaria italica Si010533m.g N 0.000
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N 0.000
TCM_041590 Theobroma cacao TCM_041590 N 0.000
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N 0.000
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N 0.000
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N 0.000
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N 0.000
FIT1 Vitis vinifera VIT_06s0061g00720 N 0.000