ENSCSAVG00000008685 (Ciona savignyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCSAVG00000008685 T208474_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hox12
M02075_2.00 		Ciona intestinalis
TTWAYKAY
RTMRTWAA		 PBM
Weirauch et al.(2014)
pTH6299 		0.864 0.912
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.668 0.667
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.668 0.667
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.668 0.667
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.668 0.667
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.668 0.667
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.668 0.667
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.668 0.667
HXD12_HETFR
M02196_2.00 		Heterodontus francisci
TTWATKRC
GYMATWAA		 PBM
Weirauch et al.(2014)
pTH6533 		0.660 0.702
Mnx1
M00388_2.00 		Mus musculus
NTAATBDNNN
NNNHVATTAN		 PBM
Berger et al.(2008)
Hlxb9_3422 		0.624 0.561
MNX1
M03143_2.00 		Homo sapiens
NHTAATTRNH
DNYAATTADN		 SELEX
Jolma et al.(2013)
MNX1_1 		0.624 0.561
MNX1
M05126_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX 		0.624 0.561
MNX1
M05127_2.00 		Homo sapiens
HTAAYGHB
VDCRTTAD		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1 		0.624 0.561
MNX1
M05128_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2 		0.624 0.561
exex
M03871_2.00 		Drosophila melanogaster
NNNNYAATTNNYDN
NHRNNAATTRNNNN		 SELEX
Nitta et al.(2015)
exex_1 		0.624 0.544
exex
M06544_2.00 		Drosophila melanogaster
BTAATTA
TAATTAV		 B1H
Mathelier et al.(2014)
MA0224.1 		0.624 0.544
exex
M06364_2.00 		Drosophila melanogaster
TAATTAV
BTAATTA		 B1H
Zhu et al.(2011)
Exex_Cell_FBgn0041156 		0.624 0.544
exex
M06365_2.00 		Drosophila melanogaster
TAATBR
YVATTA		 B1H
Zhu et al.(2011)
Exex_SOLEXA_FBgn0041156 		0.624 0.544
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.623 0.667
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.623 0.667
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.623 0.667
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.623 0.667
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.623 0.667
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.623 0.667
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.623 0.667
HOXA2
M02083_2.00 		Homo sapiens
NNNDHHNNN
NNNDDHNNN		 PBM
Weirauch et al.(2014)
pTH5887 		0.611 0.579
Hoxa2
M00403_2.00 		Mus musculus
NTAATKRNN
NNYMATTAN		 PBM
Berger et al.(2008)
Hoxa2_3079 		0.611 0.579
HOXA2
M03097_2.00 		Homo sapiens
NBTAATKRNN
NNYMATTAVN		 SELEX
Jolma et al.(2013)
HOXA2_1 		0.611 0.579
HOXB2
M03213_2.00 		Homo sapiens
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
HOXB2_1 		0.611 0.579
Hoxa2
M03251_2.00 		Mus musculus
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
Hoxa2_1 		0.611 0.579
pb
M03872_2.00 		Drosophila melanogaster
NTRAYKRY
RYMRTYAN		 SELEX
Nitta et al.(2015)
pb_1 		0.611 0.579
HOXA2
M04962_2.00 		Homo sapiens
NTAATKRV
BYMATTAN		 SELEX
Yin et al.(2017)
HOXA2_eDBD_HT-SELEX 		0.611 0.579
HOXA2
M04965_2.00 		Homo sapiens
NTAATKAB
VTMATTAN		 SELEX
Yin et al.(2017)
HOXA2_FL_HT-SELEX 		0.611 0.579
HOXB2
M05292_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
HOXB2_eDBD_HT-SELEX 		0.611 0.579
pb
M06545_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0238.1 		0.611 0.579
pb
M06366_2.00 		Drosophila melanogaster
BYTAATKA
TMATTARV		 B1H
Zhu et al.(2011)
Pb_Cell_FBgn0051481 		0.611 0.579
pb
M06367_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
Pb_SOLEXA_FBgn0051481 		0.611 0.579
Hoxa2
M09566_2.00 		Mus musculus
DTGATKGATKDB
VHMATCMATCAH		 Misc
Heinz et al.(2010)
mES-Hoxa2_Donaldson_et_al. 		0.611 0.579
HOXA2
M04963_2.00 		Homo sapiens
NTAATTAN
NTAATTAN		 SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_1 		0.611 0.579
HOXA2
M04964_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_2 		0.611 0.579
HOXA2
M04966_2.00 		Homo sapiens
NTAATKAB
VTMATTAN		 SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_1 		0.611 0.579
HOXA2
M04967_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_2 		0.611 0.579
HOXB2
M05293_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_1 		0.611 0.579
HOXB2
M05294_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_2 		0.611 0.579
eve
M00556_2.00 		Drosophila melanogaster
NNTAATTARN
NYTAATTANN		 PBM
Busser et al.(2012a)
Eve 		0.606 0.474
eve
M02115_2.00 		Drosophila melanogaster
NTAATNDNN
NNHNATTAN		 PBM
Weirauch et al.(2014)
pTH6436 		0.606 0.474
eve
M03794_2.00 		Drosophila melanogaster
VYTAATKASN
NSTMATTARB		 SELEX
Nitta et al.(2015)
eve_1 		0.606 0.474
eve
M06486_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0221.1 		0.606 0.474
eve
M06240_2.00 		Drosophila melanogaster
DYTAATKA
TMATTARH		 B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606 		0.606 0.474
eve
M06241_2.00 		Drosophila melanogaster
HKBTAAYNDTKY
RMAHNRTTAVMD		 B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606 		0.606 0.474
eve
M06242_2.00 		Drosophila melanogaster
NYTAATKA
TMATTARN		 B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606 		0.606 0.474
eve
M09678_2.00 		Drosophila melanogaster
NKHTAATKD
HMATTADMN		 Misc
Kulakovskiy et al.(2009)
eve 		0.606 0.474
eve
M10786_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$EVE_Q6 		0.606 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000014842 Homeodomain 394 450

Links

Other Homeodomain family TFs
Other Ciona savignyi TFs

570 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O7_09119 Cladophialophora yegresii A1O7_09119 N 0.000
ACRE_014740 Acremonium chrysogenum ACRE_014740 N 0.000
BBA_02647 Beauveria bassiana BBA_02647 N 0.000
CCM_07784 Cordyceps militaris CCM_07784 N 0.000
CFIO01_07024 Colletotrichum fioriniae CFIO01_07024 N 0.000
CGGC5_5573 Colletotrichum gloeosporioides CGGC5_5573 N 0.000
CH063_15006 Colletotrichum higginsianum CH063_15006 N 0.000
CHGG_02516 Chaetomium globosum CHGG_02516 N 0.000
CMQ_4199 Grosmannia clavigera CMQ_4199 N 0.000
Cob_09094 Colletotrichum orbiculare Cob_09094 N 0.000
CPUR_01126 Claviceps purpurea CPUR_01126 N 0.000
CTHT_0065410 Chaetomium thermophilum CTHT_0065410 N 0.000
estExt_fgenesh1_pm.C_sca_6_chr9_2_00132 Nectria haematococca estExt_fgenesh1_pm.C_sca_6_chr9_2_00132 N 0.000
F503_08843 Ophiostoma piceae uamh F503_08843 N 0.000
FFUJ_02652 Fusarium fujikuroi FFUJ_02652 N 0.000
FGRRES_07192 Fusarium graminearum FGRRES_07192 N 0.000
FOXG_01610 Fusarium oxysporum FOXG_01610 N 0.000
FPSE_03190 Fusarium pseudograminearum FPSE_03190 N 0.000
FPSE_08121 Fusarium pseudograminearum FPSE_08121 N 0.000
FVEG_07971 Fusarium verticillioides FVEG_07971 N 0.000
G647_08077 Cladophialophora carrionii G647_08077 N 0.000
GGTG_00567 Gaeumannomyces graminis GGTG_00567 N 0.000
GLRG_04914 Colletotrichum graminicola GLRG_04914 N 0.000
HMPREF1624_06751 Sporothrix schenckii HMPREF1624_06751 N 0.000
MAJ_08813 Metarhizium majus MAJ_08813 N 0.000
MAM_06368 Metarhizium album MAM_06368 N 0.000
MANI_029347 Metarhizium anisopliae MANI_029347 N 0.000
MBR_06164 Metarhizium brunneum MBR_06164 N 0.000
MGG_08199 Magnaporthe oryzae MGG_08199 N 0.000
MGU_09718 Metarhizium guizhouense MGU_09718 N 0.000
MYCTH_2300935 Myceliophthora thermophila MYCTH_2300935 N 0.000
NechaG105293 Fusarium solani NechaG105293 N 0.000
PFICI_09473 Pestalotiopsis fici PFICI_09473 N 0.000
PV04_09712 Capronia semiimmersa PV04_09712 N 0.000
S40285_04907 Stachybotrys chlorohalonata S40285_04907 N 0.000
S40288_01479 Stachybotrys chartarum S40288_01479 N 0.000
SAPIO_CDS9588 Scedosporium apiospermum SAPIO_CDS9588 N 0.000
SPBR_06470 Sporothrix brasiliensis SPBR_06470 N 0.000
THITE_2107109 Thielavia terrestris THITE_2107109 N 0.000
TRIATDRAFT_145197 Trichoderma atroviride TRIATDRAFT_145197 N 0.000
TRIREDRAFT_103230 Trichoderma reesei TRIREDRAFT_103230 N 0.000
TRIVIDRAFT_73221 Trichoderma virens TRIVIDRAFT_73221 N 0.000
UCREL1_8591 Eutypa lata UCREL1_8591 N 0.000
UV8b_2670 Ustilaginoidea virens UV8b_2670 N 0.000
VDAG_01318 Verticillium dahliae VDAG_01318 N 0.000
VHEMI01158 Torrubiella hemipterigena VHEMI01158 N 0.000
X797_010380 Metarhizium robertsii X797_010380 N 0.000