irx1b (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000009006 T210065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mirr
M06514_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0233.1 		0.824 0.912
mirr
M06305_2.00 		Drosophila melanogaster
NDNWWACA
TGTWWNHN		 B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343 		0.824 0.912
mirr
M06306_2.00 		Drosophila melanogaster
DDWACA
TGTWHH		 B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343 		0.824 0.912
Irx3
M00453_2.00 		Mus musculus
NNDACAHNNN
NNNDTGTHNN		 PBM
Berger et al.(2008)
Irx3_0920 		0.824 0.895
Irx3
M00454_2.00 		Mus musculus
NNDACWHN
NDWGTHNN		 PBM
Berger et al.(2008)
Irx3_2226 		0.824 0.895
Irx3
M03266_2.00 		Mus musculus
WWTKTCATGTWR
YWACATGAMAWW		 SELEX
Jolma et al.(2013)
Irx3_1 		0.824 0.895
IRX1
M05283_2.00 		Homo sapiens
DDCRHNNNNNNNNDYGHH
DDCRHNNNNNNNNDYGHH		 SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX 		0.824 0.895
IRX3
M05319_2.00 		Homo sapiens
DACAHGNWWWWNCDTGTH
DACAHGNWWWWNCDTGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX 		0.824 0.895
IRX1
M05284_2.00 		Homo sapiens
NNCRHNNNNNNNNDYVHN
NDBRHNNNNNNNNDYGNN		 SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX 		0.824 0.895
IRX3
M05320_2.00 		Homo sapiens
DACRYRHNWWNDYKCGTW
WACGMRHNWWNDYRYGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX 		0.824 0.895
SNAPOd2T00005194001
M02229_2.00 		Oikopleura dioica
NNTACATGTDN
NHACATGTANN		 PBM
Weirauch et al.(2014)
pTH5976 		0.802 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000011891 Homeodomain 118 174

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I 0.000
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I 0.000
BGIOSGA034853 Oryza indica BGIOSGA034853 N 0.000
BGIOSGA037037 Oryza indica BGIOSGA037037 I 0.000
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I 0.000
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I 0.000
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I 0.000
Cla014037 Citrullus lanatus Cla014037 I 0.000
Cla015261 Citrullus lanatus Cla015261 I 0.000
Cucsa.363640 Cucumis sativus Cucsa.363640 I 0.000
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I 0.000
F775_08606 Aegilops tauschii F775_08606 I 0.000
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I 0.000
GRMZM2G079365 Zea mays GRMZM2G079365 I 0.000
GRMZM2G136266 Zea mays GRMZM2G136266 I 0.000
GRMZM2G146020 Zea mays GRMZM2G146020 I 0.000
GRMZM5G821024 Zea mays GRMZM5G821024 I 0.000
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I 0.000
GSMUA_Achr6G13040_001 Musa acuminata GSMUA_Achr6G13040_001 I 0.000
GSMUA_Achr6G18130_001 Musa acuminata GSMUA_Achr6G18130_001 I 0.000
LPERR11G03390 Leersia perrieri LPERR11G03390 I 0.000
LPERR12G03530 Leersia perrieri LPERR12G03530 I 0.000
Lus10029773.g Linum usitatissimum Lus10029773.g I 0.000
Lus10042802.g Linum usitatissimum Lus10042802.g I 0.000
mgf003343m Mimulus guttatus mgf003343m I 0.000
MLOC_71198 Hordeum vulgare MLOC_71198 I 0.000
OB11G13300 Oryza brachyantha OB11G13300 I 0.000
OB12G13750 Oryza brachyantha OB12G13750 I 0.000
OBART12G03760 Oryza barthii OBART12G03760 I 0.000
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N 0.000
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I 0.000
OLONG_001598 Oryza longistaminata OLONG_001598 I 0.000
OMERI11G03570 Oryza meridionalis OMERI11G03570 N 0.000
OMERI12G02030 Oryza meridionalis OMERI12G02030 I 0.000
ONIVA11G04030 Oryza nivara ONIVA11G04030 I 0.000
ONIVA12G03450 Oryza nivara ONIVA12G03450 I 0.000
OPUNC11G03640 Oryza punctata OPUNC11G03640 N 0.000
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I 0.000
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I 0.000
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I 0.000
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I 0.000
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I 0.000
OS11G0160500 Oryza sativa OS11G0160500 N 0.000
OS12G0162500 Oryza sativa OS12G0162500 I 0.000
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I 0.000
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N 0.000
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I 0.000
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I 0.000
PK27109.1 Cannabis sativa PK27109.1 D 0.000
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I 0.000
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I 0.000
SapurV1A.0256s0010 Salix purpurea SapurV1A.0256s0010 I 0.000
SapurV1A.1302s0050 Salix purpurea SapurV1A.1302s0050 I 0.000
Sb05g003810 Sorghum bicolor Sb05g003810 I 0.000
Sb08g003940 Sorghum bicolor Sb08g003940 I 0.000
Si010549m.g Setaria italica Si010549m.g I 0.000
Si026605m.g Setaria italica Si026605m.g I 0.000
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I 0.000
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I 0.000
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I 0.000
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I 0.000
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N 0.000
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I 0.000
TRIUR3_12877 Triticum urartu TRIUR3_12877 I 0.000
TRIUR3_31416 Triticum urartu TRIUR3_31416 I 0.000
VIP1 Vitis vinifera VIT_18s0076g00330 I 0.000