DBX1 (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000014112 T210127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Dbx1
M00451_2.00 		Mus musculus
WTTAATTA
TAATTAAW		 PBM
Berger et al.(2008)
Dbx1_3486 		0.862 0.946
Dbx2
M00499_2.00 		Mus musculus
NNDTNNN
NNNAHNN		 PBM
Berger et al.(2008)
Dbx2_3487 		0.826 0.821
Dbx
M02128_2.00 		Drosophila melanogaster
WTTAATTA
TAATTAAW		 PBM
Weirauch et al.(2014)
pTH6051 		0.818 0.857
Dbx
M06550_2.00 		Drosophila melanogaster
TTWATKA
TMATWAA		 B1H
Mathelier et al.(2014)
MA0174.1 		0.818 0.857
Hlx
M00485_2.00 		Mus musculus
NNNAWND
HNWTNNN		 PBM
Berger et al.(2008)
Hlx1_2350 		0.733 0.696
H2.0
M06489_2.00 		Drosophila melanogaster
WTWATDA
THATWAW		 B1H
Mathelier et al.(2014)
MA0448.1 		0.732 0.714
H2.0
M06250_2.00 		Drosophila melanogaster
TWWWWDA
THAWWWA		 B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170 		0.732 0.714
H2.0
M06251_2.00 		Drosophila melanogaster
WTWATTRN
NYAATWAW		 B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170 		0.732 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000018634 Homeodomain 181 236

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g129970 Brassica oleracea Bo1g129970 N 0.000
Bo9g044150 Brassica oleracea Bo9g044150 N 0.000
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 0.000
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 0.000
Carubv10013145m.g Capsella rubella Carubv10013145m.g N 0.000
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.000
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.000
Cucsa.057910 Cucumis sativus Cucsa.057910 N 0.000
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.000
gene27341-v1.0-hybrid Fragaria vesca gene27341-v1.0-hybrid N 0.000
GLYMA09G15135 Glycine max GLYMA09G15135 N 0.000
GLYMA15G27362 Glycine max GLYMA15G27362 N 0.000
Gorai.004G271300 Gossypium raimondii Gorai.004G271300 N 0.000
Gorai.007G331900 Gossypium raimondii Gorai.007G331900 N 0.000
Lus10005558.g Linum usitatissimum Lus10005558.g N 0.000
PGSC0003DMG400021296 Solanum tuberosum PGSC0003DMG400021296 N 0.000
PK12364.1 Cannabis sativa PK12364.1 N 0.000
Pm011252 Prunus mume Pm011252 N 0.000
Pm014562 Prunus mume Pm014562 N 0.000
POPTR_0001s39240 Populus trichocarpa POPTR_0001s39240 N 0.000
POPTR_0011s10500 Populus trichocarpa POPTR_0011s10500 N 0.000
PRUPE_ppa002416mg Prunus persica PRUPE_ppa002416mg N 0.000
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.000
SapurV1A.0020s0660 Salix purpurea SapurV1A.0020s0660 N 0.000
SapurV1A.0026s0130 Salix purpurea SapurV1A.0026s0130 N 0.000
Solyc10g007470.2 Solanum lycopersicum Solyc10g007470.2 N 0.000
TCM_032128 Theobroma cacao TCM_032128 N 0.000
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 0.000
VIT_19s0014g00320 Vitis vinifera VIT_19s0014g00320 N 0.000