SIX6 (Loxodonta africana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLAFG00000003106 T210972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000002581 Homeodomain 167 223
ENSLAFP00000022323 Homeodomain 156 212

Links

Other Homeodomain family TFs
Other Loxodonta africana TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29584.m000234 Ricinus communis 29584.m000234 I
29680.m001678 Ricinus communis 29680.m001678 I
29895.m000321 Ricinus communis 29895.m000321 I
29900.m001561 Ricinus communis 29900.m001561 I
AC206951.3_FG016 Zea mays AC206951.3_FG016 N
AC206951.3_FG017 Zea mays AC206951.3_FG017 I
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I
BGIOSGA003364 Oryza indica BGIOSGA003364 I
BGIOSGA011326 Oryza indica BGIOSGA011326 I
BGIOSGA012597 Oryza indica BGIOSGA012597 N
BGIOSGA023726 Oryza indica BGIOSGA023726 N
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I
cassava38509.m1 Manihot esculenta cassava38509.m1 I
cassava47179.m1 Manihot esculenta cassava47179.m1 I
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I
Ca_07754 Cicer arietinum Ca_07754 I
Ca_12081 Cicer arietinum Ca_12081 I
Ca_23170 Cicer arietinum Ca_23170 I
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I
Cla006080 Citrullus lanatus Cla006080 I
Cla007697 Citrullus lanatus Cla007697 I
Cucsa.053560 Cucumis sativus Cucsa.053560 I
Cucsa.062330 Cucumis sativus Cucsa.062330 I
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I
F775_25471 Aegilops tauschii F775_25471 I
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I
GLYMA10G00980 Glycine max GLYMA10G00980 I
GLYMA10G04210 Glycine max GLYMA10G04210 I
GLYMA13G18410 Glycine max GLYMA13G18410 I
GLYMA19G43815 Glycine max GLYMA19G43815 I
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I
GRMZM2G025062 Zea mays GRMZM2G025062 I
GRMZM2G053503 Zea mays GRMZM2G053503 I
GRMZM2G169382 Zea mays GRMZM2G169382 I
GRMZM2G381441 Zea mays GRMZM2G381441 I
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I
LPERR03G14670 Leersia perrieri LPERR03G14670 N
Lus10011829.g Linum usitatissimum Lus10011829.g I
Lus10021193.g Linum usitatissimum Lus10021193.g I
Lus10022015.g Linum usitatissimum Lus10022015.g I
Lus10022935.g Linum usitatissimum Lus10022935.g I
Lus10042557.g Linum usitatissimum Lus10042557.g I
MDP0000127134 Malus domestica MDP0000127134 I
MDP0000167207 Malus domestica MDP0000167207 I
MDP0000235313 Malus domestica MDP0000235313 I
MDP0000246808 Malus domestica MDP0000246808 I
MDP0000322279 Malus domestica MDP0000322279 I
MDP0000447570 Malus domestica MDP0000447570 I
MDP0000855671 Malus domestica MDP0000855671 I
mgf018693m Mimulus guttatus mgf018693m I
mgf023600m Mimulus guttatus mgf023600m I
MLOC_80197 Hordeum vulgare MLOC_80197 I
MTR_1g043350 Medicago truncatula MTR_1g043350 I
MTR_1g069945 Medicago truncatula MTR_1g069945 I
MTR_1g074370 Medicago truncatula MTR_1g074370 I
OBART03G06100 Oryza barthii OBART03G06100 I
OBART07G26160 Oryza barthii OBART07G26160 N
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N
OMERI03G05920 Oryza meridionalis OMERI03G05920 I
OMERI03G15020 Oryza meridionalis OMERI03G15020 N
OMERI07G22780 Oryza meridionalis OMERI07G22780 N
OMERI12G11270 Oryza meridionalis OMERI12G11270 I
ONIVA03G06100 Oryza nivara ONIVA03G06100 N
ONIVA03G06110 Oryza nivara ONIVA03G06110 I
ONIVA03G17860 Oryza nivara ONIVA03G17860 N
ONIVA07G25780 Oryza nivara ONIVA07G25780 N
OPUNC01G12900 Oryza punctata OPUNC01G12900 I
OPUNC03G05900 Oryza punctata OPUNC03G05900 I
OPUNC03G16250 Oryza punctata OPUNC03G16250 N
OPUNC03G38860 Oryza punctata OPUNC03G38860 I
OPUNC07G24590 Oryza punctata OPUNC07G24590 N
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N
OS01G0313300 Oryza sativa OS01G0313300 I
OS03G0183300 Oryza sativa OS03G0183300 I
OS03G0341000 Oryza sativa OS03G0341000 N
OS07G0674800 Oryza sativa OS07G0674800 N
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I
Pavir.J08480 Panicum virgatum Pavir.J08480 I
Pavir.J12680 Panicum virgatum Pavir.J12680 N
Pavir.J16149 Panicum virgatum Pavir.J16149 I
Pm009382 Prunus mume Pm009382 I
Pm020604 Prunus mume Pm020604 I
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I
Sb01g000352 Sorghum bicolor Sb01g000352 I
Sb01g045040 Sorghum bicolor Sb01g045040 I
Sb01g045050 Sorghum bicolor Sb01g045050 N
Sb02g042760 Sorghum bicolor Sb02g042760 I
Sb03g012890 Sorghum bicolor Sb03g012890 I
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I
Si002845m.g Setaria italica Si002845m.g I
Si031079m.g Setaria italica Si031079m.g I
Si036118m.g Setaria italica Si036118m.g I
Si038911m.g Setaria italica Si038911m.g I
TCM_020871 Theobroma cacao TCM_020871 I
TCM_026233 Theobroma cacao TCM_026233 I
TCM_026234 Theobroma cacao TCM_026234 I
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I
TRIUR3_28710 Triticum urartu TRIUR3_28710 I
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I