ENSONIG00000015890 (Oreochromis niloticus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSONIG00000015890 T213637_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.867 1.000
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.947
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.947
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.947
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.947
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.947
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.947
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000020013 Homeodomain 170 226

Links

Other Homeodomain family TFs
Other Oreochromis niloticus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC206951.3_FG016 Zea mays AC206951.3_FG016 N
AC206951.3_FG017 Zea mays AC206951.3_FG017 I
BGIOSGA003364 Oryza indica BGIOSGA003364 I
BGIOSGA011326 Oryza indica BGIOSGA011326 I
BGIOSGA012597 Oryza indica BGIOSGA012597 N
BGIOSGA023726 Oryza indica BGIOSGA023726 N
BGIOSGA032849 Oryza indica BGIOSGA032849 I
Bra021594 Brassica rapa Bra021594 I
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I
cassava47179.m1 Manihot esculenta cassava47179.m1 I
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I
GLYMA19G43815 Glycine max GLYMA19G43815 I
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I
GRMZM2G025062 Zea mays GRMZM2G025062 I
GRMZM2G053503 Zea mays GRMZM2G053503 I
GRMZM2G169382 Zea mays GRMZM2G169382 I
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I
LPERR03G05410 Leersia perrieri LPERR03G05410 N
LPERR03G14670 Leersia perrieri LPERR03G14670 N
Lus10021873.g Linum usitatissimum Lus10021873.g I
MDP0000322279 Malus domestica MDP0000322279 I
OBART03G06100 Oryza barthii OBART03G06100 I
OBART07G26160 Oryza barthii OBART07G26160 N
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I
OMERI03G05920 Oryza meridionalis OMERI03G05920 I
OMERI03G15020 Oryza meridionalis OMERI03G15020 N
OMERI07G22780 Oryza meridionalis OMERI07G22780 N
OMERI10G05820 Oryza meridionalis OMERI10G05820 I
OMERI12G11270 Oryza meridionalis OMERI12G11270 I
ONIVA03G06100 Oryza nivara ONIVA03G06100 N
ONIVA03G06110 Oryza nivara ONIVA03G06110 I
ONIVA03G17860 Oryza nivara ONIVA03G17860 N
ONIVA07G25780 Oryza nivara ONIVA07G25780 N
ONIVA10G08250 Oryza nivara ONIVA10G08250 I
OPUNC01G12900 Oryza punctata OPUNC01G12900 I
OPUNC03G05900 Oryza punctata OPUNC03G05900 I
OPUNC03G16250 Oryza punctata OPUNC03G16250 N
OPUNC07G24590 Oryza punctata OPUNC07G24590 N
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I
OS01G0313300 Oryza sativa OS01G0313300 I
OS03G0183300 Oryza sativa OS03G0183300 I
OS03G0341000 Oryza sativa OS03G0341000 N
OS07G0674800 Oryza sativa OS07G0674800 N
OS10G0390800 Oryza sativa OS10G0390800 I
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I
Pavir.J08480 Panicum virgatum Pavir.J08480 I
Pavir.J12680 Panicum virgatum Pavir.J12680 N
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I
Sb01g045040 Sorghum bicolor Sb01g045040 I
Sb01g045050 Sorghum bicolor Sb01g045050 N
Sb02g042760 Sorghum bicolor Sb02g042760 I
Sb03g012890 Sorghum bicolor Sb03g012890 I
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I
Si002845m.g Setaria italica Si002845m.g I
Si031079m.g Setaria italica Si031079m.g I
Si036118m.g Setaria italica Si036118m.g I
TCM_026233 Theobroma cacao TCM_026233 I
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I
TRIUR3_28710 Triticum urartu TRIUR3_28710 I