CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

F775_29232 *(Aegilops tauschii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	F775_29232	T217396_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.766	0.632
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.766	0.632
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.766	0.632
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.766	0.632
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.722	0.596
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.722	0.596
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.718	0.632
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.716	0.579
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.716	0.579
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.716	0.579
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.716	0.579
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.704	0.596
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.704	0.596
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.704	0.596
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.704	0.596
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.688	0.702
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.688	0.702
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.671	0.561
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.671	0.561
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.669	0.561
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.669	0.561
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.665	0.544
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.665	0.544
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EMT19543	Homeodomain	53	110	AERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRS

Links
Other Homeodomain family TFs
Other *Aegilops tauschii* TFs

761 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
GRMZM2G069176	Zea mays	GRMZM2G069176	N	0.000
GRMZM2G106026	Zea mays	GRMZM2G106026	N	0.000
GRMZM2G113860	Zea mays	GRMZM2G113860	N	0.000
LjSGA_004510.1	Lotus japonicus	LjSGA_004510.1	I	0.000
MLOC_51405	Hordeum vulgare	MLOC_51405	I	0.000
OBART07G20660	Oryza barthii	OBART07G20660	N	0.000
OGLUM07G20440	Oryza glumaepatula	OGLUM07G20440	N	0.000
OMERI07G17320	Oryza meridionalis	OMERI07G17320	N	0.000
ONIVA07G19100	Oryza nivara	ONIVA07G19100	N	0.000
OPUNC07G19500	Oryza punctata	OPUNC07G19500	N	0.000
ORGLA07G0158200	Oryza glaberrima	ORGLA07G0158200	N	0.000
ORUFI07G21520	Oryza rufipogon	ORUFI07G21520	N	0.000
OS07G0590100	Oryza sativa	OS07G0590100	N	0.000
Pavir.Ib01978	Panicum virgatum	Pavir.Ib01978	N	0.000
Pavir.J12087	Panicum virgatum	Pavir.J12087	N	0.000
Pavir.J37325	Panicum virgatum	Pavir.J37325	N	0.000
Sb01g031890	Sorghum bicolor	Sb01g031890	N	0.000
Sb01g031900	Sorghum bicolor	Sb01g031900	N	0.000
Sb02g038390	Sorghum bicolor	Sb02g038390	N	0.000
Si037429m.g	Setaria italica	Si037429m.g	N	0.000

F775_29232 (Aegilops tauschii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

761 Related TFs

F775_29232 **(Aegilops tauschii)
Homeodomain**