MLOC_3638 (Hordeum vulgare)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MLOC_3638 T220685_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.744 0.808
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.645 0.615
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.587
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.645 0.615
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.645 0.615
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.645 0.615
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_3638.1 Homeodomain 1 26
MLOC_3638.2 Homeodomain 339 387
MLOC_3638.3 Homeodomain 339 387

Links

Other Homeodomain family TFs
Other Hordeum vulgare TFs

1022 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N
30170.m013700 Ricinus communis 30170.m013700 N
Aquca_007_00701 Aquilegia coerulea Aquca_007_00701 N
BHLH95 Arabidopsis thaliana AT1G49770 N
Bo5g076460 Brassica oleracea Bo5g076460 N
Bo6g018390 Brassica oleracea Bo6g018390 N
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N
Bra018796 Brassica rapa Bra018796 N
Bra040671 Brassica rapa Bra040671 N
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N
Carubv10011964m.g Capsella rubella Carubv10011964m.g N
cassava46929.m1 Manihot esculenta cassava46929.m1 N
cassava47360.m1 Manihot esculenta cassava47360.m1 N
Ca_06466 Cicer arietinum Ca_06466 N
Ca_16375 Cicer arietinum Ca_16375 N
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N
gene24577-v1.0-hybrid Fragaria vesca gene24577-v1.0-hybrid N
GLYMA02G11500 Glycine max GLYMA02G11500 N
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N
Lus10024812.g Linum usitatissimum Lus10024812.g N
MDP0000484847 Malus domestica MDP0000484847 N
mgf020647m Mimulus guttatus mgf020647m N
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N
Pavir.J18412 Panicum virgatum Pavir.J18412 N
PGSC0003DMG400025780 Solanum tuberosum PGSC0003DMG400025780 N
PGSC0003DMG400025781 Solanum tuberosum PGSC0003DMG400025781 N
PGSC0003DMG400025783 Solanum tuberosum PGSC0003DMG400025783 N
Pm005302 Prunus mume Pm005302 N
Pm021290 Prunus mume Pm021290 N
RGE1 Populus trichocarpa POPTR_0001s31250 N
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N
Solyc01g057300.1 Solanum lycopersicum Solyc01g057300.1 N
Solyc01g107950.1 Solanum lycopersicum Solyc01g107950.1 N
Solyc01g107960.2 Solanum lycopersicum Solyc01g107960.2 N
TCM_007083 Theobroma cacao TCM_007083 N
TCM_033803 Theobroma cacao TCM_033803 N
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N
RGE1 Vitis vinifera VIT_03s0063g00170 N
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N