POPTR_0011s11510 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0011s11510 T222556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.722 0.614
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.722 0.614
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.722 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.722 0.596
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.631 0.561
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.631 0.561
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.626 0.526
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.626 0.526
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.626 0.526
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.623 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s11510.1 Homeodomain 17 73

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000044 Ricinus communis 27494.m000044 I
29904.m003012 Ricinus communis 29904.m003012 I
AMTR_s00001p00210810 Amborella trichopoda AMTR_s00001p00210810 I
AMTR_s00004p00074220 Amborella trichopoda AMTR_s00004p00074220 I
AMTR_s00039p00112210 Amborella trichopoda AMTR_s00039p00112210 I
Aquca_007_00342 Aquilegia coerulea Aquca_007_00342 I
Aquca_009_00534 Aquilegia coerulea Aquca_009_00534 I
Aquca_030_00151 Aquilegia coerulea Aquca_030_00151 I
Aquca_034_00184 Aquilegia coerulea Aquca_034_00184 I
GATA1 Arabidopsis thaliana AT3G24050 D
GATA6 Arabidopsis thaliana AT3G51080 D
GATA5 Arabidopsis thaliana AT5G66320 I
BGIOSGA008714 Oryza indica BGIOSGA008714 I
BGIOSGA009241 Oryza indica BGIOSGA009241 I
BGIOSGA016846 Oryza indica BGIOSGA016846 I
Bo1g039780 Brassica oleracea Bo1g039780 I
Bo1g060480 Brassica oleracea Bo1g060480 I
Bo3g081950 Brassica oleracea Bo3g081950 I
Bo7g100740 Brassica oleracea Bo7g100740 I
Bo9g022010 Brassica oleracea Bo9g022010 I
Bostr.0568s0044 Boechera stricta Bostr.0568s0044 I
Bostr.19424s0211 Boechera stricta Bostr.19424s0211 I
Bra001925 Brassica rapa Bra001925 I
Bra012871 Brassica rapa Bra012871 I
Bra013870 Brassica rapa Bra013870 I
Bra037173 Brassica rapa Bra037173 I
Bra038882 Brassica rapa Bra038882 I
BRADI3G50160 Brachypodium distachyon BRADI3G50160 I
BRADI3G54720 Brachypodium distachyon BRADI3G54720 I
BRADI5G17057 Brachypodium distachyon BRADI5G17057 I
Cagra.0026s0014 Capsella grandiflora Cagra.0026s0014 I
Cagra.0926s0073 Capsella grandiflora Cagra.0926s0073 I
Cagra.6467s0001 Capsella grandiflora Cagra.6467s0001 I
Carubv10014365m.g Capsella rubella Carubv10014365m.g I
Carubv10017445m.g Capsella rubella Carubv10017445m.g I
Carubv10026725m.g Capsella rubella Carubv10026725m.g I
cassava22621.valid.m1 Manihot esculenta cassava22621.valid.m1 I
cassava22622.valid.m1 Manihot esculenta cassava22622.valid.m1 I
cassava22623.valid.m1 Manihot esculenta cassava22623.valid.m1 I
cassava24373.valid.m1 Manihot esculenta cassava24373.valid.m1 I
cassava35682.valid.m1 Manihot esculenta cassava35682.valid.m1 I
cassava37880.valid.m1 Manihot esculenta cassava37880.valid.m1 I
cassava38225.valid.m1 Manihot esculenta cassava38225.valid.m1 I
Ca_08250 Cicer arietinum Ca_08250 I
Ca_08487 Cicer arietinum Ca_08487 I
Ca_16593 Cicer arietinum Ca_16593 I
Ca_27641 Cicer arietinum Ca_27641 I
Ciclev10005658m.g Citrus clementina Ciclev10005658m.g I
Ciclev10021190m.g Citrus clementina Ciclev10021190m.g I
Ciclev10032018m.g Citrus clementina Ciclev10032018m.g I
Cla007764 Citrullus lanatus Cla007764 I
Cla013978 Citrullus lanatus Cla013978 I
Cucsa.137630 Cucumis sativus Cucsa.137630 I
Cucsa.194390 Cucumis sativus Cucsa.194390 I
Cucsa.308400 Cucumis sativus Cucsa.308400 I
Eucgr.A02086 Eucalyptus grandis Eucgr.A02086 I
Eucgr.G01722 Eucalyptus grandis Eucgr.G01722 I
Eucgr.G02840 Eucalyptus grandis Eucgr.G02840 I
Eucgr.H00105 Eucalyptus grandis Eucgr.H00105 I
Eucgr.I02372 Eucalyptus grandis Eucgr.I02372 I
Eucgr.J01083 Eucalyptus grandis Eucgr.J01083 I
Eucgr.J02392 Eucalyptus grandis Eucgr.J02392 I
evm.TU.contig_41047 Carica papaya evm.TU.contig_41047 I
evm.TU.supercontig_150.28 Carica papaya evm.TU.supercontig_150.28 I
evm.TU.supercontig_546.1 Carica papaya evm.TU.supercontig_546.1 I
F775_11212 Aegilops tauschii F775_11212 I
F775_20887 Aegilops tauschii F775_20887 I
GATA6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001213 I
GATA1 Arabidopsis lyrata fgenesh2_kg.3__2631__AT3G24050.1 I
GATA5 Arabidopsis lyrata fgenesh2_kg.8__2789__AT5G66320.1 I
gene20756-v1.0-hybrid Fragaria vesca gene20756-v1.0-hybrid I
gene23279-v1.0-hybrid Fragaria vesca gene23279-v1.0-hybrid I
GLYMA02G07850 Glycine max GLYMA02G07850 I
GLYMA02G08145 Glycine max GLYMA02G08145 I
GLYMA07G14750 Glycine max GLYMA07G14750 I
GLYMA10G25480 Glycine max GLYMA10G25480 I
GLYMA10G35470 Glycine max GLYMA10G35470 I
GLYMA16G04670 Glycine max GLYMA16G04670 I
GLYMA16G26870 Glycine max GLYMA16G26870 I
GLYMA16G27171 Glycine max GLYMA16G27171 I
GLYMA19G28650 Glycine max GLYMA19G28650 I
GLYMA20G32050 Glycine max GLYMA20G32050 I
Gorai.006G054800 Gossypium raimondii Gorai.006G054800 I
Gorai.007G049700 Gossypium raimondii Gorai.007G049700 I
Gorai.007G197900 Gossypium raimondii Gorai.007G197900 I
Gorai.007G287800 Gossypium raimondii Gorai.007G287800 I
Gorai.009G313700 Gossypium raimondii Gorai.009G313700 I
Gorai.011G238800 Gossypium raimondii Gorai.011G238800 I
GRMZM2G054615 Zea mays GRMZM2G054615 I
GRMZM2G140669 Zea mays GRMZM2G140669 I
GRMZM2G163200 Zea mays GRMZM2G163200 I
GRMZM2G379005 Zea mays GRMZM2G379005 I
GRMZM2G404973 Zea mays GRMZM2G404973 I
GSMUA_Achr11G17140_001 Musa acuminata GSMUA_Achr11G17140_001 I
GSMUA_Achr1G08980_001 Musa acuminata GSMUA_Achr1G08980_001 I
GSMUA_Achr2G02830_001 Musa acuminata GSMUA_Achr2G02830_001 I
GSMUA_Achr2G12730_001 Musa acuminata GSMUA_Achr2G12730_001 I
GSMUA_Achr3G18320_001 Musa acuminata GSMUA_Achr3G18320_001 I
GSMUA_Achr4G21390_001 Musa acuminata GSMUA_Achr4G21390_001 I
GSMUA_Achr4G24760_001 Musa acuminata GSMUA_Achr4G24760_001 I
GSMUA_Achr4G29140_001 Musa acuminata GSMUA_Achr4G29140_001 I
GSMUA_Achr5G13580_001 Musa acuminata GSMUA_Achr5G13580_001 I
GSMUA_Achr5G15220_001 Musa acuminata GSMUA_Achr5G15220_001 I
GSMUA_Achr5G19930_001 Musa acuminata GSMUA_Achr5G19930_001 I
GSMUA_Achr6G26330_001 Musa acuminata GSMUA_Achr6G26330_001 I
GSMUA_Achr9G20700_001 Musa acuminata GSMUA_Achr9G20700_001 I
gw1.241.61.1 Physcomitrella patens gw1.241.61.1 I
gw1.32.153.1 Physcomitrella patens gw1.32.153.1 I
gw1.32.154.1 Physcomitrella patens gw1.32.154.1 I
LjSGA_027909.1 Lotus japonicus LjSGA_027909.1 I
LjSGA_052745.2 Lotus japonicus LjSGA_052745.2 I
LPERR02G30140 Leersia perrieri LPERR02G30140 I
LPERR04G16350 Leersia perrieri LPERR04G16350 I
Lus10009227.g Linum usitatissimum Lus10009227.g I
Lus10011762.g Linum usitatissimum Lus10011762.g I
Lus10023684.g Linum usitatissimum Lus10023684.g I
Lus10037994.g Linum usitatissimum Lus10037994.g I
MDP0000137305 Malus domestica MDP0000137305 I
MDP0000224540 Malus domestica MDP0000224540 I
MDP0000248942 Malus domestica MDP0000248942 I
MDP0000528111 Malus domestica MDP0000528111 I
mgf000143m Mimulus guttatus mgf000143m I
mgf000977m Mimulus guttatus mgf000977m I
mgf002151m Mimulus guttatus mgf002151m I
mgf006020m Mimulus guttatus mgf006020m I
mgf010484m Mimulus guttatus mgf010484m I
mgf020912m Mimulus guttatus mgf020912m I
mgf025806m Mimulus guttatus mgf025806m I
MLOC_56963 Hordeum vulgare MLOC_56963 I
MTR_1g046680 Medicago truncatula MTR_1g046680 I
MTR_1g094930 Medicago truncatula MTR_1g094930 I
MTR_4g071590 Medicago truncatula MTR_4g071590 I
MTR_4g471590 Medicago truncatula MTR_4g471590 I
MTR_6g032830 Medicago truncatula MTR_6g032830 I
MTR_7g085410 Medicago truncatula MTR_7g085410 I
OB02G43220 Oryza brachyantha OB02G43220 I
OB04G27190 Oryza brachyantha OB04G27190 I
OGLUM02G26320 Oryza glumaepatula OGLUM02G26320 I
OGLUM02G37730 Oryza glumaepatula OGLUM02G37730 I
OGLUM04G20120 Oryza glumaepatula OGLUM04G20120 I
OMERI02G25330 Oryza meridionalis OMERI02G25330 I
OMERI02G34480 Oryza meridionalis OMERI02G34480 I
ONIVA02G28320 Oryza nivara ONIVA02G28320 I
ONIVA02G38990 Oryza nivara ONIVA02G38990 I
ONIVA04G18420 Oryza nivara ONIVA04G18420 I
OPUNC02G23650 Oryza punctata OPUNC02G23650 I
OPUNC02G33710 Oryza punctata OPUNC02G33710 I
OPUNC04G17860 Oryza punctata OPUNC04G17860 I
orange1.1g016706m.g Citrus sinensis orange1.1g016706m.g I
orange1.1g020996m.g Citrus sinensis orange1.1g020996m.g I
orange1.1g024771m.g Citrus sinensis orange1.1g024771m.g I
ORGLA02G0221200 Oryza glaberrima ORGLA02G0221200 I
ORGLA02G0317800 Oryza glaberrima ORGLA02G0317800 I
ORUFI02G27260 Oryza rufipogon ORUFI02G27260 I
ORUFI02G38070 Oryza rufipogon ORUFI02G38070 I
ORUFI04G21800 Oryza rufipogon ORUFI04G21800 I
OS02G0645600 Oryza sativa OS02G0645600 I
OS04G0539500 Oryza sativa OS04G0539500 I
Pavir.Aa00151 Panicum virgatum Pavir.Aa00151 I
Pavir.Aa01215 Panicum virgatum Pavir.Aa01215 I
Pavir.Ab02582 Panicum virgatum Pavir.Ab02582 I
Pavir.Ab03246 Panicum virgatum Pavir.Ab03246 I
Pavir.Ga00679 Panicum virgatum Pavir.Ga00679 I
Pavir.Gb01182 Panicum virgatum Pavir.Gb01182 I
PGSC0003DMG400003126 Solanum tuberosum PGSC0003DMG400003126 I
PGSC0003DMG400003545 Solanum tuberosum PGSC0003DMG400003545 I
PGSC0003DMG400011579 Solanum tuberosum PGSC0003DMG400011579 I
PGSC0003DMG400023341 Solanum tuberosum PGSC0003DMG400023341 I
PGSC0003DMG400027167 Solanum tuberosum PGSC0003DMG400027167 I
PK01325.1 Cannabis sativa PK01325.1 I
PK13647.1 Cannabis sativa PK13647.1 I
PK18657.1 Cannabis sativa PK18657.1 I
Pm017785 Prunus mume Pm017785 I
Pm018532 Prunus mume Pm018532 I
POPTR_0001s14130 Populus trichocarpa POPTR_0001s14130 I
POPTR_0003s17340 Populus trichocarpa POPTR_0003s17340 I
POPTR_0005s11960 Populus trichocarpa POPTR_0005s11960 I
POPTR_0007s13700 Populus trichocarpa POPTR_0007s13700 I
POPTR_0008s03880 Populus trichocarpa POPTR_0008s03880 I
POPTR_0010s23010 Populus trichocarpa POPTR_0010s23010 I
POPTR_0013s05610 Populus trichocarpa POPTR_0013s05610 I
POPTR_0019s04860 Populus trichocarpa POPTR_0019s04860 I
PRUPE_ppa007936mg Prunus persica PRUPE_ppa007936mg I
PRUPE_ppa014583m1g Prunus persica PRUPE_ppa014583m1g I
Q76DY3_TOBAC Nicotiana tabacum Q76DY3_TOBAC D
SapurV1A.0056s0470 Salix purpurea SapurV1A.0056s0470 I
SapurV1A.0308s0200 Salix purpurea SapurV1A.0308s0200 I
SapurV1A.0518s0130 Salix purpurea SapurV1A.0518s0130 I
SapurV1A.0569s0120 Salix purpurea SapurV1A.0569s0120 I
SapurV1A.0657s0040 Salix purpurea SapurV1A.0657s0040 I
SapurV1A.0680s0040 Salix purpurea SapurV1A.0680s0040 I
SapurV1A.0802s0090 Salix purpurea SapurV1A.0802s0090 I
SapurV1A.1928s0030 Salix purpurea SapurV1A.1928s0030 I
SapurV1A.2002s0020 Salix purpurea SapurV1A.2002s0020 I
Sb04g033450 Sorghum bicolor Sb04g033450 I
Sb04g036520 Sorghum bicolor Sb04g036520 I
Sb06g023940 Sorghum bicolor Sb06g023940 I
SELMODRAFT_29496 Selaginella moellendorffii SELMODRAFT_29496 I
SELMODRAFT_29498 Selaginella moellendorffii SELMODRAFT_29498 I
SELMODRAFT_29502 Selaginella moellendorffii SELMODRAFT_29502 I
SELMODRAFT_69566 Selaginella moellendorffii SELMODRAFT_69566 I
SELMODRAFT_69567 Selaginella moellendorffii SELMODRAFT_69567 I
Si010126m.g Setaria italica Si010126m.g I
Si017219m.g Setaria italica Si017219m.g I
Si017317m.g Setaria italica Si017317m.g I
Solyc01g110310.2 Solanum lycopersicum Solyc01g110310.2 I
Solyc02g084590.2 Solanum lycopersicum Solyc02g084590.2 I
Solyc05g053500.2 Solanum lycopersicum Solyc05g053500.2 I
Solyc05g056120.2 Solanum lycopersicum Solyc05g056120.2 I
Solyc09g091250.2 Solanum lycopersicum Solyc09g091250.2 I
TCM_000262 Theobroma cacao TCM_000262 I
TCM_020437 Theobroma cacao TCM_020437 I
TCM_026451 Theobroma cacao TCM_026451 I
TCM_043158 Theobroma cacao TCM_043158 I
Thhalv10002609m.g Eutrema salsugineum Thhalv10002609m.g I
Thhalv10004566m.g Eutrema salsugineum Thhalv10004566m.g I
Thhalv10025666m.g Eutrema salsugineum Thhalv10025666m.g I
Traes_2AL_0EB34993E Triticum aestivum Traes_2AL_0EB34993E I
Traes_2BL_6899C8ABD Triticum aestivum Traes_2BL_6899C8ABD I
Traes_2DL_EEF2E71FA Triticum aestivum Traes_2DL_EEF2E71FA I
Traes_6AL_47F6C4665 Triticum aestivum Traes_6AL_47F6C4665 I
Traes_6AL_FD17E787A Triticum aestivum Traes_6AL_FD17E787A I
Traes_6DL_410C5CD3B Triticum aestivum Traes_6DL_410C5CD3B I
Traes_6DL_604AFCFEF Triticum aestivum Traes_6DL_604AFCFEF I
TRIUR3_08114 Triticum urartu TRIUR3_08114 I
TRIUR3_22272 Triticum urartu TRIUR3_22272 I
GATA1 Vitis vinifera VIT_05s0051g00450 I
VIT_08s0007g07550 Vitis vinifera VIT_08s0007g07550 I
BME3-ZF Vitis vinifera VIT_13s0019g04390 I