CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0012s07270 *(Populus trichocarpa)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	POPTR_0012s07270	T222560_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.827	0.842
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.827	0.842
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.827	0.842
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.827	0.842
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.817	0.772
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.817	0.772
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.817	0.772
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.817	0.772
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.813	0.754
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.813	0.754
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.800	0.825
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.800	0.789
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.796	0.754
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.796	0.754
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.796	0.754
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.705	0.632
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.705	0.632
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.705	0.649
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.705	0.649
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.700	0.614
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.700	0.614
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.675	0.789
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.675	0.789
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.655	0.772
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.655	0.772
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.600	0.596
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.600	0.596
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0012s07270.1	Homeodomain	87	143	PEKKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Populus trichocarpa* TFs

815 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACEP15315	Atta cephalotes	ACEP15315	N	0.000
ACHR007556	Anopheles christyi	ACHR007556	N	0.000
ADIR004612	Anopheles dirus	ADIR004612	N	0.000
AEPI000661	Anopheles epiroticus	AEPI000661	N	0.000
AQUA004623	Anopheles quadriannulatus	AQUA004623	N	0.000
ASIS006297	Anopheles sinensis	ASIS006297	N	0.000
CRE03357	Caenorhabditis remanei	CRE03357	N	0.000
D918_03763	Trichuris suis	D918_03763	N	0.000
DILT_0001312701	Diphyllobothrium latum	DILT_0001312701	N	0.000
ECPE_0000273401	Echinostoma caproni	ECPE_0000273401	N	0.000
GK24890	Drosophila willistoni	FBgn0226849	N	0.000
fgenesh1_kg.C_scaffold_16000108	Phytophthora capsici	fgenesh1_kg.C_scaffold_16000108	N	0.000
LOAG_09072	Loa loa	LOAG_09072	N	0.000
MDOA004921	Musca domestica	MDOA004921	N	0.000
PEQ_0000587201	Parascaris equorum	PEQ_0000587201	N	0.000
PEQ_0000595901	Parascaris equorum	PEQ_0000595901	N	0.000
PXEA_0001865101	Protopolystoma xenopodis	PXEA_0001865101	N	0.000
PXEA_0002437401	Protopolystoma xenopodis	PXEA_0002437401	N	0.000
Sjc_0082940	Schistosoma japonicum	Sjc_0082940	N	0.000
SMU15026520	Schmidtea mediterranea	SMU15026520	N	0.000
SPER_0000032601	Spirometra erinaceieuropaei	SPER_0000032601	N	0.000
SPER_0001686401	Spirometra erinaceieuropaei	SPER_0001686401	N	0.000
SPER_0003607601	Spirometra erinaceieuropaei	SPER_0003607601	N	0.000
SSLN_0001114201	Schistocephalus solidus	SSLN_0001114201	N	0.000
pax6.L	Xenopus laevis	XB-GENE-865046	I	0.000

POPTR_0012s07270 (Populus trichocarpa) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

815 Related TFs

POPTR_0012s07270 **(Populus trichocarpa)
Homeodomain**