ceh-40 (Caenorhabditis elegans)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 WBGene00000461 T224622_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.836 0.772
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.836 0.754
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.836 0.754
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.836 0.754
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.836 0.754
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.836 0.754
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.836 0.754
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.836 0.754
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.836 0.754
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.836 0.754
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.836 0.754
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.836 0.754
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.836 0.754
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.836 0.754
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.836 0.754
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.836 0.754
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.836 0.754
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.836 0.754
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.836 0.737
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.793 0.719
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.793 0.719
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.791 0.754
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.791 0.754
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.791 0.754
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.791 0.754
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.791 0.754
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.705 0.544
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.655 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
F17A2.5 Homeodomain 188 247

Links

Other Homeodomain family TFs
Other Caenorhabditis elegans TFs

434 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003280 Calypte anna Aan_R003280 I
Afo_R009791 Aptenodytes forsteri Afo_R009791 I
Alligator_sinensis_CCG014289.1 Alligator sinensis Alligator_sinensis_CCG014289.1 I
Brh_R006404 Buceros rhinoceros Brh_R006404 I
Cmyd_10015187 Chelonia mydas Cmyd_10015187 I
MYBL2 Anolis carolinensis ENSACAG00000002463 I
ENSAMEG00000003831 Ailuropoda melanoleuca ENSAMEG00000003831 I
ENSAPLG00000005213 Anas platyrhynchos ENSAPLG00000005213 I
MYBL2 Bos taurus ENSBTAG00000007783 I
MYBL2 Canis familiaris ENSCAFG00000009336 I
ENSCJAG00000017819 Callithrix jacchus ENSCJAG00000017819 I
MYBL2 Cavia porcellus ENSCPOG00000020458 I
ENSCSAG00000014069 Chlorocebus sabaeus ENSCSAG00000014069 I
Mybl2 Dipodomys ordii ENSDORG00000006855 I
MYBL2 Equus caballus ENSECAG00000005925 I
MYBL2 Erinaceus europaeus ENSEEUG00000007817 I
ENSFALG00000005745 Ficedula albicollis ENSFALG00000005745 I
MYBL2 Felis catus ENSFCAG00000011141 I
MYBL2 Homo sapiens ENSG00000101057 D
MYBL2 Gallus gallus ENSGALG00000003503 I
ENSLACG00000018995 Latimeria chalumnae ENSLACG00000018995 I
MYBL2 Loxodonta africana ENSLAFG00000006698 I
ENSLOCG00000001337 Lepisosteus oculatus ENSLOCG00000001337 I
MYBL2 Meleagris gallopavo ENSMGAG00000002972 I
MYBL2 Myotis lucifugus ENSMLUG00000016678 I
MYBL2 Macaca mulatta ENSMMUG00000018137 I
ENSMMUP00000023843 Macaca fascicularis ENSMMUP00000023843 I
MYBL2 Monodelphis domestica ENSMODG00000001228 I
ENSMPUG00000017680 Mustela putorius furo ENSMPUG00000017680 I
Mybl2 Mus musculus ENSMUSG00000017861 D
ENSOANG00000011081 Ornithorhynchus anatinus ENSOANG00000011081 I
ENSOARG00000003547 Ovis aries ENSOARG00000003547 I
MYBL2 Oryctolagus cuniculus ENSOCUG00000005775 I
MYBL2 Otolemur garnettii ENSOGAG00000007702 I
ENSP00000217026-D1 Bos grunniens ENSP00000217026-D1 I
ENSPANG00000023992 Papio anubis ENSPANG00000023992 I
MYBL2 Procavia capensis ENSPCAG00000004366 I
ENSPPYG00000011022 Pongo abelii ENSPPYG00000011022 I
ENSPSIG00000016162 Pelodiscus sinensis ENSPSIG00000016162 I
MYBL2 Pan troglodytes ENSPTRG00000013510 I
Mybl2 Rattus norvegicus ENSRNOG00000007805 I
ENSSHAG00000005654 Sarcophilus harrisii ENSSHAG00000005654 I
MYBL2 Sus scrofa ENSSSCG00000007366 I
ENSSTOG00000010149 Ictidomys tridecemlineatus ENSSTOG00000010149 I
ENSTGUG00000004426 Taeniopygia guttata ENSTGUG00000004426 I
MYBL2 Tursiops truncatus ENSTTRG00000013493 I
Gfo_R005427 Geospiza fortis Gfo_R005427 I
Myotis_brandtii_MYBL2_10025179 Myotis brandtii Myotis_brandtii_MYBL2_10025179 I
Ogr13963 Ophisaurus gracilis Ogr13963 I
Pvit_07752 Pogona vitticeps Pvit_07752 I
S33643 Xenopus laevis S33643 I
Tal_R007942 Tyto alba Tal_R007942 I
mybl2 Xenopus tropicalis XB-GENE-982419 I
mybl2.S Xenopus laevis XB-GENE-982423 I