CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HXD12_HETFR *(Heterodontus francisci)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	HXD12_HETFR	T226927_2.00	HughesLab (2013-Jun-13)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HXD12_HETFR M02196_2.00	Heterodontus francisci	TTWATKRC	GYMATWAA	PBM Weirauch et al.(2014) pTH6533	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxd12_CONSTRUCT M00538_2.00	PBM CONSTRUCTS	NWTWAYNDBN	NVHNRTWAWN	PBM Berger et al.(2008) Hoxd12_3481	0.830	0.947
HOXD12 M03206_2.00	Homo sapiens	SYAATAAAA	TTTTATTRS	SELEX Jolma et al.(2013) HOXD12_1	0.830	0.947
HOXD12 M03207_2.00	Homo sapiens	RVTCGTAAAAH	DTTTTACGABY	SELEX Jolma et al.(2013) HOXD12_2	0.830	0.947
HOXD12 M03208_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Jolma et al.(2013) HOXD12_3	0.830	0.947
HOXD12 M03209_2.00	Homo sapiens	DTTWATYRC	GYRATWAAH	SELEX Jolma et al.(2013) HOXD12_4	0.830	0.947
HOXD12 M05279_2.00	Homo sapiens	NKTWACGAYN	NRTCGTWAMN	SELEX Yin et al.(2017) HOXD12_eDBD_HT-SELEX	0.830	0.947
HOXD12 M05280_2.00	Homo sapiens	NRTCGTAAAH	DTTTACGAYN	SELEX Yin et al.(2017) HOXD12_eDBD_Methyl-HT-SELEX	0.830	0.947
Hoxc12 M00508_2.00	Mus musculus	NDTWAYNDBN	NVHNRTWAHN	PBM Berger et al.(2008) Hoxc12_3480	0.785	0.842
HOXC12 M03135_2.00	Homo sapiens	TTTTATTRY	RYAATAAAA	SELEX Jolma et al.(2013) HOXC12_1	0.785	0.842
HOXC12 M03136_2.00	Homo sapiens	RRTCGTAAAAH	DTTTTACGAYY	SELEX Jolma et al.(2013) HOXC12_2	0.785	0.842
HOXC12 M05083_2.00	Homo sapiens	NGYAATAAAAN	NTTTTATTRCN	SELEX Yin et al.(2017) HOXC12_eDBD_HT-SELEX_1	0.785	0.842
HOXC12 M05084_2.00	Homo sapiens	VRTCGTAAAHN	NDTTTACGAYB	SELEX Yin et al.(2017) HOXC12_eDBD_HT-SELEX_2	0.785	0.842
HOXC12 M05085_2.00	Homo sapiens	NGYAATAAAAH	DTTTTATTRCN	SELEX Yin et al.(2017) HOXC12_eDBD_Methyl-HT-SELEX_1	0.785	0.842
HOXC12 M05086_2.00	Homo sapiens	NRTCGTAAAHH	DDTTTACGAYN	SELEX Yin et al.(2017) HOXC12_eDBD_Methyl-HT-SELEX_2	0.785	0.842
Abd-B M00554_2.00	Drosophila melanogaster	NWTWAYDDNN	NNHHRTWAWN	PBM Busser et al.(2012a) Abd-B	0.688	0.614
Abd-B M03772_2.00	Drosophila melanogaster	DRTCRTAAAWH	DWTTTAYGAYH	SELEX Nitta et al.(2015) Abd-B_1	0.688	0.614
Abd-B M03773_2.00	Drosophila melanogaster	DTTTTATKRCY	RGYMATAAAAH	SELEX Nitta et al.(2015) Abd-B_2	0.688	0.614
Abd-B M03774_2.00	Drosophila melanogaster	NKCARYAACGACYW	WRGTCGTTRYTGMN	SELEX Nitta et al.(2015) Abd-B_3	0.688	0.614
Abd-B M03775_2.00	Drosophila melanogaster	DTTTWATGKSTTTY	RAAASMCATWAAAH	SELEX Nitta et al.(2015) Abd-B_4	0.688	0.614
Abd-B M06476_2.00	Drosophila melanogaster	TTTATKR	YMATAAA	B1H Mathelier et al.(2014) MA0165.1	0.688	0.614
Abd-B M06211_2.00	Drosophila melanogaster	YCATAAAA	TTTTATGR	B1H Zhu et al.(2011) Abd-B_FlyReg_FBgn0000015	0.688	0.614
Abd-B M09672_2.00	Drosophila melanogaster	YMATAAAAHH	DDTTTTATKR	Misc Kulakovskiy et al.(2009) Abd-B	0.688	0.614
Abd-B M10779_2.00	Drosophila melanogaster	VSNTTDATKRCNNN	NNNGYMATHAANSB	Transfac Matys et al.(2006) I$ABDB_01	0.688	0.614
Abd-B M10780_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$ABDB_Q6	0.688	0.614
hox12 M02075_2.00	Ciona intestinalis	TTWAYKAY	RTMRTWAA	PBM Weirauch et al.(2014) pTH6299	0.658	0.667
Q9U9Y9_LINUN M02218_2.00	Lingula unguis	NNTAATWAATN	NATTWATTANN	PBM Weirauch et al.(2014) pTH5504	0.634	0.614
Evx2 M00393_2.00	Mus musculus	NNTAAYNN	NNRTTANN	PBM Berger et al.(2008) Evx2_2645	0.619	0.509
Evx1 M00395_2.00	Mus musculus	NTAATBDNN	NNHVATTAN	PBM Berger et al.(2008) Evx1_3952	0.619	0.509
EVX1 M03102_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX1_1	0.619	0.509
EVX2 M03215_2.00	Homo sapiens	NNTAATBRBN	NVYVATTANN	SELEX Jolma et al.(2013) EVX2_1	0.619	0.509
EVX1 M04985_2.00	Homo sapiens	VTAATKAB	VTMATTAB	SELEX Yin et al.(2017) EVX1_eDBD_HT-SELEX	0.619	0.509
EVX2 M05295_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_HT-SELEX	0.619	0.509
EVX2 M09158_2.00	Homo sapiens	NBTTTATKRCHNN	NNDGYMATAAAVN	Misc Kulakovskiy et al.(2013) EVX2_HUMAN.H11MO.0.A	0.619	0.509
Evx1 M09174_2.00	Mus musculus	WGATTTATDRBHN	NDVYHATAAATCW	Misc Kulakovskiy et al.(2013) EVX1_MOUSE.H11MO.0.C	0.619	0.509
Evx2 M09173_2.00	Mus musculus	BTTTATKRCHBN	NVDGYMATAAAV	Misc Kulakovskiy et al.(2013) EVX2_MOUSE.H11MO.0.A	0.619	0.509
EVX2 M10736_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EVX2_04	0.619	0.509
EVX1 M04986_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_1	0.619	0.509
EVX1 M04987_2.00	Homo sapiens	HTWAYGAB	VTCRTWAD	SELEX Yin et al.(2017) EVX1_eDBD_Methyl-HT-SELEX_2	0.619	0.509
EVX2 M05296_2.00	Homo sapiens	NTAATKAN	NTMATTAN	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_1	0.619	0.509
EVX2 M05297_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) EVX2_eDBD_Methyl-HT-SELEX_2	0.619	0.509
Hoxd11 M00493_2.00	Mus musculus	DDDNNNNN	NNNNNHHH	PBM Berger et al.(2008) Hoxd11_3873	0.618	0.667
HOXD11 M03139_2.00	Homo sapiens	RTCGTAAAWH	DWTTTACGAY	SELEX Jolma et al.(2013) HOXD11_1	0.618	0.667
HOXD11 M03140_2.00	Homo sapiens	TTTWATKRBH	DVYMATWAAA	SELEX Jolma et al.(2013) HOXD11_2	0.618	0.667
HOXD11 M05120_2.00	Homo sapiens	NRTCGTWAANNDTWAH	DTWAHNNTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_HT-SELEX	0.618	0.667
HOXD11 M05121_2.00	Homo sapiens	NRTCGTWAAHNDTWAH	DTWAHNDTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_Methyl-HT-SELEX	0.618	0.667
Hoxc11 M00390_2.00	Mus musculus	NTTWAYDDBN	NVHHRTWAAN	PBM Berger et al.(2008) Hoxc11_3718	0.618	0.649
Hoxa11 M00474_2.00	Mus musculus	NNHNHNNNN	NNNNDNDNN	PBM Berger et al.(2008) Hoxa11_2218	0.618	0.649
HOXC11 M03131_2.00	Homo sapiens	NWTTWAYGAYH	DRTCRTWAAWN	SELEX Jolma et al.(2013) HOXC11_1	0.618	0.649
HOXC11 M03132_2.00	Homo sapiens	NWTTWATKRBH	DVYMATWAAWN	SELEX Jolma et al.(2013) HOXC11_2	0.618	0.649
HOXC11 M03133_2.00	Homo sapiens	DRTCGTWAAWN	NWTTWACGAYH	SELEX Jolma et al.(2013) HOXC11_3	0.618	0.649
HOXC11 M03134_2.00	Homo sapiens	NTTTTATKRBN	NVYMATAAAAN	SELEX Jolma et al.(2013) HOXC11_4	0.618	0.649
Hoxa11 M03274_2.00	Mus musculus	NNDTTWAYGABN	NVTCRTWAAHNN	SELEX Jolma et al.(2013) Hoxa11_1	0.618	0.649
Hoxa11 M03275_2.00	Mus musculus	NDTTWATKRNN	NNYMATWAAHN	SELEX Jolma et al.(2013) Hoxa11_2	0.618	0.649
HOXA11 M04897_2.00	Homo sapiens	VGTCGTAAAWH	DWTTTACGACB	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_1	0.618	0.649
HOXA11 M04898_2.00	Homo sapiens	DDTTWATKRSN	NSYMATWAAHH	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_2	0.618	0.649
HOXC11 M05075_2.00	Homo sapiens	NDTTWACGAYN	NRTCGTWAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_1	0.618	0.649
HOXC11 M05076_2.00	Homo sapiens	NWTTWATKRCH	DGYMATWAAWN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_2	0.618	0.649
HOXC11 M05079_2.00	Homo sapiens	NRTCGTWAAHN	NDTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_1	0.618	0.649
HOXC11 M05080_2.00	Homo sapiens	NDTTWATKRSN	NSYMATWAAHN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_2	0.618	0.649
HOXA11 M04899_2.00	Homo sapiens	NRTCGTAAAWH	DWTTTACGAYN	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_1	0.618	0.649
HOXA11 M04900_2.00	Homo sapiens	DYTTTATKRCH	DGYMATAAARH	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_2	0.618	0.649
HOXC11 M05077_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_1	0.618	0.649
HOXC11 M05078_2.00	Homo sapiens	NDTTTATKRSN	NSYMATAAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_2	0.618	0.649
HOXC11 M05081_2.00	Homo sapiens	NRTCGTWAANN	NNTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_1	0.618	0.649
HOXC11 M05082_2.00	Homo sapiens	NNTTWAYKRSN	NSYMRTWAANN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_2	0.618	0.649
vab-7 M02186_2.00	Caenorhabditis elegans	KTAATTAK	MTAATTAM	PBM Weirauch et al.(2014) pTH6104	0.617	0.474
ventx1.2.S M10805_2.00	Xenopus laevis	RSRMAAATWBBVS	SBBBWATTTKYSY	Transfac Matys et al.(2006) V$XVENT1_01	0.606	0.509
For this family, TFs with SR scores > 0.599* will likely have a similar motif*