29973.m000390 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29973.m000390 T226992_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.826 0.681
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29973.m000390 Homeodomain 387 436

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N 0.000
30170.m013700 Ricinus communis 30170.m013700 N 0.000
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N 0.000
cassava46929.m1 Manihot esculenta cassava46929.m1 N 0.000
cassava47360.m1 Manihot esculenta cassava47360.m1 N 0.000
Ca_16375 Cicer arietinum Ca_16375 N 0.000
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N 0.000
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N 0.000
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N 0.000
mgf020647m Mimulus guttatus mgf020647m N 0.000
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N 0.000
PGSC0003DMG400025780 Solanum tuberosum PGSC0003DMG400025780 N 0.000
PGSC0003DMG400025781 Solanum tuberosum PGSC0003DMG400025781 N 0.000
PGSC0003DMG400025782 Solanum tuberosum PGSC0003DMG400025782 N 0.000
Pm021290 Prunus mume Pm021290 N 0.000
RGE1 Populus trichocarpa POPTR_0001s31250 N 0.000
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N 0.000
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N 0.000
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N 0.000
Solyc01g057300.1 Solanum lycopersicum Solyc01g057300.1 N 0.000
Solyc01g107950.1 Solanum lycopersicum Solyc01g107950.1 N 0.000
Solyc01g107960.2 Solanum lycopersicum Solyc01g107960.2 N 0.000
TCM_007083 Theobroma cacao TCM_007083 N 0.000
TCM_033803 Theobroma cacao TCM_033803 N 0.000
RGE1 Vitis vinifera VIT_03s0063g00170 N 0.000
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N 0.000