cassava24236.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava24236.valid.m1 T227070_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.840 0.809
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24236.valid.m1 Homeodomain 363 412

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006371 Calypte anna Aan_R006371 I
Afo_R010037 Aptenodytes forsteri Afo_R010037 I
Alligator_sinensis_CCG017947.1 Alligator sinensis Alligator_sinensis_CCG017947.1 I
Aqu1.203581 Amphimedon queenslandica Aqu1.203581 I
Aqu1.204705 Amphimedon queenslandica Aqu1.204705 I
Aqu1.224590 Amphimedon queenslandica Aqu1.224590 I
Brh_R005100 Buceros rhinoceros Brh_R005100 I
CapteG160905 Capitella teleta CapteG160905 I
Cflo_12808--XP_001122269.1_APIME Camponotus floridanus Cflo_12808--XP_001122269.1_APIME I
CGI_10021920 Crassostrea gigas CGI_10021920 I
Cmyd_10002310 Chelonia mydas Cmyd_10002310 I
DNMT1 Anolis carolinensis ENSACAG00000003948 I
ENSAMEG00000011823 Ailuropoda melanoleuca ENSAMEG00000011823 I
ENSAMXG00000012182 Astyanax mexicanus ENSAMXG00000012182 I
DNMT1 Bos taurus ENSBTAG00000002736 I
DNMT1 Canis familiaris ENSCAFG00000017892 I
DNMT1 Choloepus hoffmanni ENSCHOG00000009490 I
DNMT1 Callithrix jacchus ENSCJAG00000005794 I
DNMT1 Cavia porcellus ENSCPOG00000019557 I
ENSCSAG00000007378 Chlorocebus sabaeus ENSCSAG00000007378 I
ENSCSAVG00000006002 Ciona savignyi ENSCSAVG00000006002 I
dnmt1 Danio rerio ENSDARG00000030756 I
DNMT1 Dasypus novemcinctus ENSDNOG00000003313 I
Dnmt1 Dipodomys ordii ENSDORG00000014116 I
DNMT1 Equus caballus ENSECAG00000026909 I
DNMT1 Echinops telfairi ENSETEG00000012574 I
ENSFALG00000007760 Ficedula albicollis ENSFALG00000007760 I
DNMT1 Felis catus ENSFCAG00000012246 I
DNMT1 Homo sapiens ENSG00000130816 D
dnmt1 Gasterosteus aculeatus ENSGACG00000013741 I
ENSGALG00000028997 Gallus gallus ENSGALG00000028997 I
DNMT1 Gorilla gorilla ENSGGOG00000016574 I
ENSGMOG00000003491 Gadus morhua ENSGMOG00000003491 I
DNMT1 Loxodonta africana ENSLAFG00000002818 I
ENSLOCG00000007421 Lepisosteus oculatus ENSLOCG00000007421 I
ENSMEUG00000012650 Macropus eugenii ENSMEUG00000012650 I
DNMT1 Microcebus murinus ENSMICG00000010231 I
DNMT1 Myotis lucifugus ENSMLUG00000001347 I
DNMT1 Macaca mulatta ENSMMUG00000014604 I
DNMT1 Monodelphis domestica ENSMODG00000005463 I
ENSMPUG00000006829 Mustela putorius furo ENSMPUG00000006829 I
Dnmt1 Mus musculus ENSMUSG00000004099 I
ENSNLEG00000012092 Nomascus leucogenys ENSNLEG00000012092 I
ENSOANG00000012255 Ornithorhynchus anatinus ENSOANG00000012255 I
ENSOARG00000015380 Ovis aries ENSOARG00000015380 I
ENSOCUG00000008415 Oryctolagus cuniculus ENSOCUG00000008415 I
DNMT1 Otolemur garnettii ENSOGAG00000001265 I
ENSONIG00000001574 Oreochromis niloticus ENSONIG00000001574 I
DNMT1 Ochotona princeps ENSOPRG00000007032 I
dnmt1 Oryzias latipes ENSORLG00000005582 I
ENSP00000352516 Macaca fascicularis ENSP00000352516 I
ENSP00000352516-D1 Bos grunniens ENSP00000352516-D1 I
ENSPANG00000001264 Papio anubis ENSPANG00000001264 I
DNMT1 Procavia capensis ENSPCAG00000011023 I
ENSPFOG00000005624 Poecilia formosa ENSPFOG00000005624 I
ENSPMAG00000002148 Petromyzon marinus ENSPMAG00000002148 I
ENSPPYG00000009545 Pongo abelii ENSPPYG00000009545 I
ENSPSIG00000002916 Pelodiscus sinensis ENSPSIG00000002916 I
DNMT1 Pan troglodytes ENSPTRG00000010461 I
DNMT1 Pteropus vampyrus ENSPVAG00000003676 I
Dnmt1 Rattus norvegicus ENSRNOG00000039859 I
ENSSHAG00000008894 Sarcophilus harrisii ENSSHAG00000008894 I
DNMT1 Sus scrofa ENSSSCG00000013659 I
ENSSTOG00000010841 Ictidomys tridecemlineatus ENSSTOG00000010841 I
ENSTGUG00000013708 Taeniopygia guttata ENSTGUG00000013708 I
dnmt1 Tetraodon nigroviridis ENSTNIG00000018567 I
dnmt1 Takifugu rubripes ENSTRUG00000008132 I
DNMT1 Tursiops truncatus ENSTTRG00000003178 I
DNMT1 Vicugna pacos ENSVPAG00000006117 I
ENSXMAG00000018063 Xiphophorus maculatus ENSXMAG00000018063 I
e_gw.24.105.1 Branchiostoma floridae e_gw.24.105.1 I
GB47348 Apis mellifera GB47348 I
GB48403 Apis mellifera GB48403 I
Gfo_R002685 Geospiza fortis Gfo_R002685 I
HelroG116156 Helobdella robusta HelroG116156 I
ISCW001108 Ixodes scapularis ISCW001108 I
LotgiG171288 Lottia gigantea LotgiG171288 I
Myotis_brandtii_DNMT1_10007965 Myotis brandtii Myotis_brandtii_DNMT1_10007965 I
NEMVEDRAFT_v1g125496 Nematostella vectensis NEMVEDRAFT_v1g125496 I
NV11649 Nasonia vitripennis NV11649 I
Ocbimv22034501m.g Octopus bimaculoides Ocbimv22034501m.g I
Ogr12994 Ophisaurus gracilis Ogr12994 I
Pvit_03471 Pogona vitticeps Pvit_03471 I
Sakowv30005306m.g Saccoglossus kowalevskii Sakowv30005306m.g I
dnmt1.S Xenopus laevis XB-GENE-17332488 I
dnmt1 Xenopus tropicalis XB-GENE-965562 I
dnmt1.L Xenopus laevis XB-GENE-965566 I
XP_002155714.1 Hydra magnipapillata XP_002155714.1 I