cassava24237.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava24237.valid.m1 T227071_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.840 0.809
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24237.valid.m1 Homeodomain 363 412

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014006 Aedes aegypti AAEL014006 I 0.000
AARA006439 Anopheles arabiensis AARA006439 I 0.000
AATE009845 Anopheles atroparvus AATE009845 I 0.000
ACHR005179 Anopheles christyi ACHR005179 I 0.000
ACOM029598 Anopheles coluzzii ACOM029598 I 0.000
ACUA019554 Anopheles culicifacies ACUA019554 I 0.000
ADAC010229 Anopheles darlingi ADAC010229 I 0.000
AEPI006519 Anopheles epiroticus AEPI006519 I 0.000
AFAF011359 Anopheles farauti AFAF011359 I 0.000
AFUN004445 Anopheles funestus AFUN004445 I 0.000
AGAP004517 Anopheles gambiae AGAP004517 I 0.000
AMEC013971 Anopheles melas AMEC013971 I 0.000
AMIN004891 Anopheles minimus AMIN004891 I 0.000
AQUA009647 Anopheles quadriannulatus AQUA009647 I 0.000
ASIS018018 Anopheles sinensis ASIS018018 I 0.000
ASTEI04844 Anopheles stephensi ASTEI04844 I 0.000
BGIBMGA002238 Bombyx mori BGIBMGA002238 I 0.000
CLEC005464 Cimex lectularius CLEC005464 I 0.000
CPIJ008311 Culex quinquefasciatus CPIJ008311 I 0.000
CpipJ_CPIJ008311 Culex pipiens CpipJ_CPIJ008311 I 0.000
DAPPUDRAFT_331337 Daphnia pulex DAPPUDRAFT_331337 I 0.000
GA22020 Drosophila pseudoobscura FBgn0082005 I 0.000
GF16814 Drosophila ananassae FBgn0093835 I 0.000
GG11643 Drosophila erecta FBgn0103940 I 0.000
GH18734 Drosophila grimshawi FBgn0126201 I 0.000
GI22886 Drosophila mojavensis FBgn0145613 I 0.000
GL12325 Drosophila persimilis FBgn0149932 I 0.000
GM10707 Drosophila sechellia FBgn0165653 I 0.000
GD19684 Drosophila simulans FBgn0191175 I 0.000
GJ14181 Drosophila virilis FBgn0201398 I 0.000
GK13762 Drosophila willistoni FBgn0215770 I 0.000
GE25358 Drosophila yakuba FBgn0242436 I 0.000
hkb Drosophila melanogaster FBgn0261434 D 0.000
HMEL016959 Heliconius melpomene HMEL016959 I 0.000
KGM_06603 Danaus plexippus KGM_06603 I 0.000
LCUP000702 Lucilia cuprina LCUP000702 I 0.000
LDEC017422 Leptinotarsa decemlineata LDEC017422 I 0.000
MCINX014717 Melitaea cinxia MCINX014717 I 0.000
MDOA010102 Musca domestica MDOA010102 I 0.000
PHUM127400 Pediculus humanus PHUM127400 I 0.000
PPAI000954 Phlebotomus papatasi PPAI000954 I 0.000
SMAR000785 Strigamia maritima SMAR000785 I 0.000
TC010992 Tribolium castaneum TC010992 I 0.000
tetur02g06400 Tetranychus urticae tetur02g06400 I 0.000
tetur02g06440 Tetranychus urticae tetur02g06440 I 0.000