Cagra.1822s0015 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1822s0015 T228220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.860 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1822s0015.1.p Homeodomain 43 99

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001418 Calypte anna Aan_R001418 N 0.000
Afo_R004241 Aptenodytes forsteri Afo_R004241 N 0.000
Brh_R009837 Buceros rhinoceros Brh_R009837 N 0.000
Cmyd_10004934 Chelonia mydas Cmyd_10004934 N 0.000
ENSAMXG00000007405 Astyanax mexicanus ENSAMXG00000007405 N 0.000
zgc:171734 Danio rerio ENSDARG00000004864 N 0.000
ENSGACG00000017356 Gasterosteus aculeatus ENSGACG00000017356 N 0.000
ENSLACG00000017498 Latimeria chalumnae ENSLACG00000017498 N 0.000
ENSLOCG00000003199 Lepisosteus oculatus ENSLOCG00000003199 N 0.000
ENSONIG00000006931 Oreochromis niloticus ENSONIG00000006931 N 0.000
ENSPSIG00000011857 Pelodiscus sinensis ENSPSIG00000011857 N 0.000
zgc:171734 Tetraodon nigroviridis ENSTNIG00000018790 N 0.000
zgc:171734 Takifugu rubripes ENSTRUG00000014847 N 0.000
Ogr09623 Ophisaurus gracilis Ogr09623 N 0.000
Pvit_19319 Pogona vitticeps Pvit_19319 N 0.000
Tal_R001189 Tyto alba Tal_R001189 N 0.000