RLT1 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT1G28420 T204455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00		 Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02038_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G28420.1 Homeodomain 40 96

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.862
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.861
Bra032908 Brassica rapa Bra032908 I 0.860
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.860
Bo5g055970 Brassica oleracea Bo5g055970 I 0.859
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.859
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.855
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.855
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.855
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.855
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.855
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.855
Ca_00337 Cicer arietinum Ca_00337 I 0.855
Ca_06343 Cicer arietinum Ca_06343 I 0.855
Cla009803 Citrullus lanatus Cla009803 I 0.855
Pm010098 Prunus mume Pm010098 I 0.855
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.855
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.855
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.855
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.855
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.855
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.855
MDP0000192108 Malus domestica MDP0000192108 I 0.855
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.855
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.855
PK13272.1 Cannabis sativa PK13272.1 I 0.855
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.853
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.853
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.844
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.844
MDP0000288192 Malus domestica MDP0000288192 I 0.843
TCM_029805 Theobroma cacao TCM_029805 I 0.839
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.839
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.839
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.833
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.833
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.832
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.832
Bo3g143570 Brassica oleracea Bo3g143570 I 0.827
Bra010869 Brassica rapa Bra010869 I 0.827
mgf006858m Mimulus guttatus mgf006858m I 0.824
mgf006635m Mimulus guttatus mgf006635m I 0.809
30190.m011307 Ricinus communis 30190.m011307 I 0.789
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.775
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.712
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.688
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.688
OBART05G25730 Oryza barthii OBART05G25730 I 0.688
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.688
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.688
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.688
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.688
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.681
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.681
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.680
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.680
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.680
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.680
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.680
PK06068.1 Cannabis sativa PK06068.1 I 0.680
Ca_11272 Cicer arietinum Ca_11272 I 0.678
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.669
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.669
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.669
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.669
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.668
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.668
TCM_008214 Theobroma cacao TCM_008214 I 0.668
29983.m003128 Ricinus communis 29983.m003128 I 0.668
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.668
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.668
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.668
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.668
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.668
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.668
Bra033725 Brassica rapa Bra033725 I 0.667
RLT2 Arabidopsis thaliana AT5G44180 I 0.665
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.661
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.661
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.658
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.650
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.649
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.649
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.649
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.646
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.646
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.646
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.646
OB01G35240 Oryza brachyantha OB01G35240 I 0.646
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.646
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.646
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.646
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.646
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.646
OS01G0672201 Oryza sativa OS01G0672201 I 0.646
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.646
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.646
Si004333m.g Setaria italica Si004333m.g I 0.646
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.645
F775_01844 Aegilops tauschii F775_01844 I 0.645
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.645
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.645
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.645
Si020949m.g Setaria italica Si020949m.g I 0.645
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.645
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.645
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.637
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.636
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.636
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.628