TCM_008214 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_008214 T223894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.668 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX99522 Homeodomain 26 82
EOX99523 Homeodomain 26 82
EOX99524 Homeodomain 26 82
EOX99525 Homeodomain 1 35
EOX99526 Homeodomain 26 82

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.862
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.846
Ca_11272 Cicer arietinum Ca_11272 I 0.844
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.825
29983.m003128 Ricinus communis 29983.m003128 I 0.825
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.825
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.825
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.825
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.825
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.825
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.824
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.824
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.824
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.824
Bo7g067190 Brassica oleracea Bo7g067190 I 0.822
Bra033725 Brassica rapa Bra033725 I 0.821
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.813
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.813
PK06068.1 Cannabis sativa PK06068.1 I 0.813
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.812
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.811
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.811
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.811
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.810
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.810
RLT2 Arabidopsis thaliana AT5G44180 I 0.794
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.793
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.793
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.789
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.776
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.776
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.776
OBART05G11630 Oryza barthii OBART05G11630 N 0.774
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.761
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.761
POPTR_0004s04840 Populus trichocarpa POPTR_0004s04840 N 0.761
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.760
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.757
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.755
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.755
OB01G35260 Oryza brachyantha OB01G35260 N 0.755
OBART01G26120 Oryza barthii OBART01G26120 N 0.755
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.755
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.754
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.754
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.747
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.741
Pm012761 Prunus mume Pm012761 N 0.739
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.739
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.738
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.736
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.736
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.735
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.729
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.726
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.726
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.724
Bo9g006410 Brassica oleracea Bo9g006410 N 0.721
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.702
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.702
OBART05G25730 Oryza barthii OBART05G25730 I 0.702
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.702
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.702
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.702
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.702
Si020949m.g Setaria italica Si020949m.g I 0.684
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.684
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.683
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.683
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.682
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.682
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.672
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.671
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.671
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.671
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.671
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.671
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.671
Ca_00337 Cicer arietinum Ca_00337 I 0.671
Ca_06343 Cicer arietinum Ca_06343 I 0.671
Cla008712 Citrullus lanatus Cla008712 I 0.671
Cla009803 Citrullus lanatus Cla009803 I 0.671
Pm010098 Prunus mume Pm010098 I 0.671
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.671
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.671
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.671
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.671
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.671
MDP0000192108 Malus domestica MDP0000192108 I 0.671
MDP0000288192 Malus domestica MDP0000288192 I 0.671
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.671
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.671
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.670
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.670
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.669
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.669
MDP0000207866 Malus domestica MDP0000207866 I 0.669
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.669
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.669
PK13272.1 Cannabis sativa PK13272.1 I 0.669
RLT1 Arabidopsis thaliana AT1G28420 D 0.668
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.668
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.668
Bo3g143570 Brassica oleracea Bo3g143570 I 0.667
Bo5g055970 Brassica oleracea Bo5g055970 I 0.667
Bra010869 Brassica rapa Bra010869 I 0.667
Bra032908 Brassica rapa Bra032908 I 0.667
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.666
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.666
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.666
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.666
OB01G35240 Oryza brachyantha OB01G35240 I 0.666
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.666
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.666
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.666
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.666
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.666
OS01G0672201 Oryza sativa OS01G0672201 I 0.666
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.666
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.666
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.666
Si004333m.g Setaria italica Si004333m.g I 0.666
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.663
F775_01844 Aegilops tauschii F775_01844 I 0.663
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.663
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.661
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.660
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.659
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.659
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.659
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.657
Ca_21400 Cicer arietinum Ca_21400 I 0.657
TCM_029805 Theobroma cacao TCM_029805 I 0.655
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.655
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.655
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.655
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.653
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.653
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.653
mgf006858m Mimulus guttatus mgf006858m I 0.647
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.646
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.646
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.641
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.634
mgf006635m Mimulus guttatus mgf006635m I 0.626
BTMF_0000474601 Brugia timori BTMF_0000474601 N 0.624
D915_07707 Fasciola hepatica D915_07707 N 0.622
ENSDNOG00000038094 Dasypus novemcinctus ENSDNOG00000038094 N 0.619
30190.m011307 Ricinus communis 30190.m011307 I 0.615
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.608
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.608
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.608
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.606
Bo9g006450 Brassica oleracea Bo9g006450 I 0.604
Bra034196 Brassica rapa Bra034196 I 0.604