Carubv10002996m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10002996m.g T228277_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.679 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002996m Homeodomain 20 76

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.867
Bo9g006450 Brassica oleracea Bo9g006450 I 0.862
Bra034196 Brassica rapa Bra034196 I 0.862
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.860
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.820
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.783
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.783
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.783
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.781
Cla008712 Citrullus lanatus Cla008712 I 0.771
MDP0000207866 Malus domestica MDP0000207866 I 0.770
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.767
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.750
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.749
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.749
Ca_21400 Cicer arietinum Ca_21400 I 0.745
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.743
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.728
PK25011.1 Cannabis sativa PK25011.1 D 0.679
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.673
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.660
mgf007720m Mimulus guttatus mgf007720m I 0.640
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.640
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.640
TCM_040945 Theobroma cacao TCM_040945 I 0.630
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.629
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.620
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.620
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.620
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.619
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.619
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.619
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.619
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.619
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.619
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.618
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.618
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.616
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.616
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.608
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.608
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.608
TCM_008214 Theobroma cacao TCM_008214 I 0.608
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.608
Ca_11272 Cicer arietinum Ca_11272 I 0.608
29983.m003128 Ricinus communis 29983.m003128 I 0.608
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.608
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.608
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.608
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.608
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.608
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.608
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.608
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.608
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.608
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.608
PK06068.1 Cannabis sativa PK06068.1 I 0.608
Bo7g067190 Brassica oleracea Bo7g067190 I 0.606
Bra033725 Brassica rapa Bra033725 I 0.606
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.606
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.606
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.606
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.606
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.606
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.606
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.606
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.606
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.604
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.601
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.599