PK06068.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK06068.1 T230077_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.680 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK06068.1 Homeodomain 35 91

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.846
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.846
Ca_11272 Cicer arietinum Ca_11272 I 0.828
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.827
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.827
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.827
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.826
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.826
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.825
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.825
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.824
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.820
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.820
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.820
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.817
Bo7g067190 Brassica oleracea Bo7g067190 I 0.815
Bra033725 Brassica rapa Bra033725 I 0.813
TCM_008214 Theobroma cacao TCM_008214 I 0.813
29983.m003128 Ricinus communis 29983.m003128 I 0.813
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.813
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.813
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.813
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.813
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.812
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.812
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.812
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.812
RLT2 Arabidopsis thaliana AT5G44180 I 0.810
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.810
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.802
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.791
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.791
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.772
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.743
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.743
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.723
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.704
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.699
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.687
PK13272.1 Cannabis sativa PK13272.1 I 0.686
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.683
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.683
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.683
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.683
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.683
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.683
Ca_00337 Cicer arietinum Ca_00337 I 0.683
Ca_06343 Cicer arietinum Ca_06343 I 0.683
Cla009803 Citrullus lanatus Cla009803 I 0.683
Pm010098 Prunus mume Pm010098 I 0.683
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.683
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.683
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.683
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.683
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.683
MDP0000192108 Malus domestica MDP0000192108 I 0.683
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.683
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.682
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.682
OBART05G25730 Oryza barthii OBART05G25730 I 0.682
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.682
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.682
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.682
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.682
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.682
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.681
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.681
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.681
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.681
RLT1 Arabidopsis thaliana AT1G28420 D 0.680
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.680
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.680
Bo3g143570 Brassica oleracea Bo3g143570 I 0.679
Bo5g055970 Brassica oleracea Bo5g055970 I 0.679
Bra010869 Brassica rapa Bra010869 I 0.679
Bra032908 Brassica rapa Bra032908 I 0.678
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.672
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.671
MDP0000288192 Malus domestica MDP0000288192 I 0.671
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.670
TCM_029805 Theobroma cacao TCM_029805 I 0.667
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.667
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.667
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.661
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.661
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.660
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.659
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.659
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.659
Cla008712 Citrullus lanatus Cla008712 I 0.659
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.658
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.658
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.657
Ca_21400 Cicer arietinum Ca_21400 I 0.657
MDP0000207866 Malus domestica MDP0000207866 I 0.657
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.655
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.653
mgf006858m Mimulus guttatus mgf006858m I 0.650
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.649
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.649
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.647
F775_01844 Aegilops tauschii F775_01844 I 0.647
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.647
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.647
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.646
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.645
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.645
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.645
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.645
OB01G35240 Oryza brachyantha OB01G35240 I 0.645
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.645
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.645
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.645
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.645
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.645
OS01G0672201 Oryza sativa OS01G0672201 I 0.645
Si004333m.g Setaria italica Si004333m.g I 0.645
Si020949m.g Setaria italica Si020949m.g I 0.639
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.638
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.638
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.637
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.637
mgf006635m Mimulus guttatus mgf006635m I 0.633
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.629
30190.m011307 Ricinus communis 30190.m011307 I 0.615
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.608
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.608
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.608
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.606
Bo9g006450 Brassica oleracea Bo9g006450 I 0.604
Bra034196 Brassica rapa Bra034196 I 0.604