Carubv10025737m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10025737m.g T228350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.681 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025737m Homeodomain 24 80

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.867
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.866
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.866
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.866
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.855
Bo7g067190 Brassica oleracea Bo7g067190 I 0.854
Bra033725 Brassica rapa Bra033725 I 0.852
RLT2 Arabidopsis thaliana AT5G44180 I 0.850
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.848
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.847
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.844
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.844
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.844
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.844
29983.m003128 Ricinus communis 29983.m003128 I 0.843
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.843
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.843
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.837
Ca_11272 Cicer arietinum Ca_11272 I 0.830
PK06068.1 Cannabis sativa PK06068.1 I 0.826
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.822
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.822
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.816
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.816
TCM_008214 Theobroma cacao TCM_008214 I 0.810
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.810
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.810
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.810
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.787
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.787
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.787
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.770
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.769
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.755
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.744
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.744
Bo3g143570 Brassica oleracea Bo3g143570 I 0.711
Bra010869 Brassica rapa Bra010869 I 0.711
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.696
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.690
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.685
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.685
OBART05G25730 Oryza barthii OBART05G25730 I 0.685
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.685
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.685
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.685
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.685
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.684
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.683
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.683
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.682
RLT1 Arabidopsis thaliana AT1G28420 D 0.681
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.681
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.681
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.680
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.680
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.680
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.680
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.680
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.680
Ca_00337 Cicer arietinum Ca_00337 I 0.680
Ca_06343 Cicer arietinum Ca_06343 I 0.680
Cla009803 Citrullus lanatus Cla009803 I 0.680
Pm010098 Prunus mume Pm010098 I 0.680
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.680
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.680
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.680
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.680
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.680
MDP0000192108 Malus domestica MDP0000192108 I 0.680
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.680
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.680
PK13272.1 Cannabis sativa PK13272.1 I 0.680
Bra032908 Brassica rapa Bra032908 I 0.679
Bo5g055970 Brassica oleracea Bo5g055970 I 0.678
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.678
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.677
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.670
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.670
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.669
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.669
MDP0000288192 Malus domestica MDP0000288192 I 0.668
TCM_029805 Theobroma cacao TCM_029805 I 0.664
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.664
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.664
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.659
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.659
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.658
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.657
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.657
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.657
Ca_21400 Cicer arietinum Ca_21400 I 0.657
Cla008712 Citrullus lanatus Cla008712 I 0.657
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.657
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.657
MDP0000207866 Malus domestica MDP0000207866 I 0.657
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.653
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.653
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.650
mgf006858m Mimulus guttatus mgf006858m I 0.649
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.647
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.647
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.645
F775_01844 Aegilops tauschii F775_01844 I 0.645
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.645
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.642
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.642
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.642
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.642
OB01G35240 Oryza brachyantha OB01G35240 I 0.642
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.642
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.642
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.642
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.642
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.642
OS01G0672201 Oryza sativa OS01G0672201 I 0.642
Si004333m.g Setaria italica Si004333m.g I 0.642
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.638
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.638
Si020949m.g Setaria italica Si020949m.g I 0.636
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.636
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.636
mgf006635m Mimulus guttatus mgf006635m I 0.632
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.630
30190.m011307 Ricinus communis 30190.m011307 I 0.616
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.606
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.606
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.606
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.606
Bo9g006450 Brassica oleracea Bo9g006450 I 0.602
Bra034196 Brassica rapa Bra034196 I 0.602