Bra034196 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra034196 T205172_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.674 0.789
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034196.1-P Homeodomain 13 69

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g006450 Brassica oleracea Bo9g006450 I 0.867
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.862
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.862
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.856
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.815
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.778
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.778
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.778
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.776
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.767
Cla008712 Citrullus lanatus Cla008712 I 0.766
MDP0000207866 Malus domestica MDP0000207866 I 0.765
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.749
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.749
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.747
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.745
Ca_21400 Cicer arietinum Ca_21400 I 0.741
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.723
PK25011.1 Cannabis sativa PK25011.1 D 0.674
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.668
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.655
mgf007720m Mimulus guttatus mgf007720m I 0.640
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.635
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.635
TCM_040945 Theobroma cacao TCM_040945 I 0.626
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.624
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.619
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.618
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.618
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.615
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.615
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.615
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.615
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.615
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.615
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.615
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.614
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.611
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.611
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.606
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.604
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.604
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.604
TCM_008214 Theobroma cacao TCM_008214 I 0.604
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.604
Ca_11272 Cicer arietinum Ca_11272 I 0.604
29983.m003128 Ricinus communis 29983.m003128 I 0.604
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.604
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.604
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.604
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.604
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.604
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.604
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.604
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.604
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.604
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.604
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.604
PK06068.1 Cannabis sativa PK06068.1 I 0.604
Bo7g067190 Brassica oleracea Bo7g067190 I 0.602
Bra033725 Brassica rapa Bra033725 I 0.602
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.602
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.602
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.602
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.602
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.602
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.602
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.602
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.601
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.600