Gorai.004G014700 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.004G014700 T228697_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.643 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G014700.1 Homeodomain 31 87
Gorai.004G014700.2 Homeodomain 17 73
Gorai.004G014700.3 Homeodomain 17 73
Gorai.004G014700.4 Homeodomain 1 45
Gorai.004G014700.5 Homeodomain 1 45

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_040945 Theobroma cacao TCM_040945 I 0.832
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.803
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.798
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.798
Pm012761 Prunus mume Pm012761 N 0.794
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.788
Bo9g006410 Brassica oleracea Bo9g006410 N 0.781
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.778
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.778
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.769
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.769
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.768
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.766
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.766
TCM_008214 Theobroma cacao TCM_008214 I 0.739
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.727
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.691
OBART05G11630 Oryza barthii OBART05G11630 N 0.679
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.673
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.666
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.666
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.662
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.662
OB01G35260 Oryza brachyantha OB01G35260 N 0.662
OBART01G26120 Oryza barthii OBART01G26120 N 0.662
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.662
POPTR_0004s04840 Populus trichocarpa POPTR_0004s04840 N 0.662
mgf007720m Mimulus guttatus mgf007720m I 0.661
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.652
PK25011.1 Cannabis sativa PK25011.1 D 0.643
BTMF_0000474601 Brugia timori BTMF_0000474601 N 0.635
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.605
Bo9g006450 Brassica oleracea Bo9g006450 I 0.604
Bra034196 Brassica rapa Bra034196 I 0.604
D915_07707 Fasciola hepatica D915_07707 N 0.602
ENSDNOG00000038094 Dasypus novemcinctus ENSDNOG00000038094 N 0.600
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.600
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.600
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.599
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.599
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.599
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.599