PGSC0003DMG400004714 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400004714 T222151_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.625 0.768
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400012007 Homeodomain 1 29
PGSC0003DMT400012008 Homeodomain 20 75

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.848
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.829
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.826
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.826
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.823
Pm012761 Prunus mume Pm012761 N 0.819
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.808
Bo9g006410 Brassica oleracea Bo9g006410 N 0.807
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.790
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.776
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.768
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.757
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.747
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.741
mgf007720m Mimulus guttatus mgf007720m I 0.731
29811.m000540 Ricinus communis 29811.m000540 N 0.729
TCM_008214 Theobroma cacao TCM_008214 I 0.726
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.662
OBART05G11630 Oryza barthii OBART05G11630 N 0.650
ENSDNOG00000038094 Dasypus novemcinctus ENSDNOG00000038094 N 0.649
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.643
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.637
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.637
POPTR_0004s04840 Populus trichocarpa POPTR_0004s04840 N 0.637
DICVIV_12877 Dictyocaulus viviparus DICVIV_12877 N 0.636
OESDEN_18963 Oesophagostomum dentatum OESDEN_18963 N 0.636
D915_07707 Fasciola hepatica D915_07707 N 0.633
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.631
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.631
OB01G35260 Oryza brachyantha OB01G35260 N 0.631
OBART01G26120 Oryza barthii OBART01G26120 N 0.631
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.631
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.629
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.625
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.625
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.625
Cla008712 Citrullus lanatus Cla008712 I 0.625
PK25011.1 Cannabis sativa PK25011.1 D 0.625
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.623
MDP0000207866 Malus domestica MDP0000207866 I 0.623
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.622
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.619
Bo9g006450 Brassica oleracea Bo9g006450 I 0.619
Bra034196 Brassica rapa Bra034196 I 0.619
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.619
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.619
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.619
Ca_21400 Cicer arietinum Ca_21400 I 0.617
BTMF_0000474601 Brugia timori BTMF_0000474601 N 0.603