Cucsa.087050 (Cucumis sativus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cucsa.087050 T227174_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.668 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.087050.1 Homeodomain 21 77
Cucsa.087050.2 Homeodomain 13 69
Cucsa.087050.3 Homeodomain 13 69
Cucsa.087050.4 Homeodomain 13 69

Links

Other Homeodomain family TFs
Other Cucumis sativus TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.864
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.864
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.864
Cla008712 Citrullus lanatus Cla008712 I 0.853
MDP0000207866 Malus domestica MDP0000207866 I 0.850
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.847
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.829
Ca_21400 Cicer arietinum Ca_21400 I 0.793
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.792
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.781
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.781
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.781
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.779
Bo9g006450 Brassica oleracea Bo9g006450 I 0.776
Bra034196 Brassica rapa Bra034196 I 0.776
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.704
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.704
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.697
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.697
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.697
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.697
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.681
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.672
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.672
PK25011.1 Cannabis sativa PK25011.1 D 0.668
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.661
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.661
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.661
TCM_008214 Theobroma cacao TCM_008214 I 0.661
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.661
29983.m003128 Ricinus communis 29983.m003128 I 0.661
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.661
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.661
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.661
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.661
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.661
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.661
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.661
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.661
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.661
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.661
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.661
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.661
PK06068.1 Cannabis sativa PK06068.1 I 0.661
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.660
Bo7g067190 Brassica oleracea Bo7g067190 I 0.659
Bra033725 Brassica rapa Bra033725 I 0.659
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.659
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.659
Ca_11272 Cicer arietinum Ca_11272 I 0.659
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.659
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.659
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.659
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.659
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.659
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.655
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.652
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.648
RLT2 Arabidopsis thaliana AT5G44180 I 0.643
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.643
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.623
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.622
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.621
mgf007720m Mimulus guttatus mgf007720m I 0.619
TCM_040945 Theobroma cacao TCM_040945 I 0.608
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.607
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.602
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.602
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.600
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.599