MDP0000207866 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000207866 T229016_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.681 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000207866 Homeodomain 18 74

Links

Other Homeodomain family TFs
Other Malus domestica TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla008712 Citrullus lanatus Cla008712 I 0.863
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.860
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.851
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.851
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.851
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.850
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.820
Ca_21400 Cicer arietinum Ca_21400 I 0.784
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.782
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.770
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.770
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.770
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.770
Bo9g006450 Brassica oleracea Bo9g006450 I 0.765
Bra034196 Brassica rapa Bra034196 I 0.765
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.708
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.702
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.702
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.697
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.687
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.687
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.682
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.682
PK25011.1 Cannabis sativa PK25011.1 D 0.681
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.680
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.671
Bo7g067190 Brassica oleracea Bo7g067190 I 0.669
Bra033725 Brassica rapa Bra033725 I 0.669
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.669
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.669
TCM_008214 Theobroma cacao TCM_008214 I 0.669
29983.m003128 Ricinus communis 29983.m003128 I 0.669
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.669
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.669
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.669
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.669
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.669
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.669
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.669
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.669
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.669
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.669
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.669
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.657
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.657
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.657
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.657
Ca_11272 Cicer arietinum Ca_11272 I 0.657
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.657
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.657
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.657
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.657
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.657
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.657
PK06068.1 Cannabis sativa PK06068.1 I 0.657
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.655
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.644
RLT2 Arabidopsis thaliana AT5G44180 I 0.641
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.640
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.633
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.632
TCM_040945 Theobroma cacao TCM_040945 I 0.625
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.623
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.619
mgf007720m Mimulus guttatus mgf007720m I 0.618
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.611
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.611
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.610
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.608
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.607
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.602