AMTR_s00058p00137050 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00058p00137050 T204396_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.628 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN06574 Homeodomain 15 71

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK06068.1 Cannabis sativa PK06068.1 I 0.802
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.800
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.798
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.798
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.790
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.790
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.769
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.769
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.769
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.769
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.769
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.769
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.769
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.769
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.769
Ca_11272 Cicer arietinum Ca_11272 I 0.768
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.757
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.757
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.757
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.757
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.757
29983.m003128 Ricinus communis 29983.m003128 I 0.757
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.757
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.757
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.757
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.757
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.757
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.757
TCM_008214 Theobroma cacao TCM_008214 I 0.757
Bo7g067190 Brassica oleracea Bo7g067190 I 0.757
Bra033725 Brassica rapa Bra033725 I 0.755
RLT2 Arabidopsis thaliana AT5G44180 I 0.752
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.748
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.720
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.720
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.681
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.680
Ca_21400 Cicer arietinum Ca_21400 I 0.680
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.680
MDP0000207866 Malus domestica MDP0000207866 I 0.680
Cla008712 Citrullus lanatus Cla008712 I 0.680
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.680
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.680
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.675
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.675
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.675
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.668
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.656
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.649
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.647
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.647
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.632
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.632
Ca_00337 Cicer arietinum Ca_00337 I 0.632
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.632
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.632
Ca_06343 Cicer arietinum Ca_06343 I 0.632
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.631
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.629
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.629
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.629
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.629
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.629
RLT1 Arabidopsis thaliana AT1G28420 D 0.628
Bra010869 Brassica rapa Bra010869 I 0.628
Bo3g143570 Brassica oleracea Bo3g143570 I 0.628
Bo5g055970 Brassica oleracea Bo5g055970 I 0.628
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.628
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.627
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.627
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.627
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.627
PK13272.1 Cannabis sativa PK13272.1 I 0.627
MDP0000192108 Malus domestica MDP0000192108 I 0.627
Bra032908 Brassica rapa Bra032908 I 0.627
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.627
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.627
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.627
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.627
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.627
Cla009803 Citrullus lanatus Cla009803 I 0.627
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.627
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.627
Pm010098 Prunus mume Pm010098 I 0.627
OBART05G25730 Oryza barthii OBART05G25730 I 0.626
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.626
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.626
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.626
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.626
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.626
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.626
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.626
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.626
mgf006858m Mimulus guttatus mgf006858m I 0.626
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.626
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.626
Bra034196 Brassica rapa Bra034196 I 0.624
Bo9g006450 Brassica oleracea Bo9g006450 I 0.624
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.621
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.621
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.621
OS01G0672201 Oryza sativa OS01G0672201 I 0.621
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.621
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.621
Si004333m.g Setaria italica Si004333m.g I 0.621
OB01G35240 Oryza brachyantha OB01G35240 I 0.621
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.621
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.621
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.621
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.621
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.621
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.621
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.619
F775_01844 Aegilops tauschii F775_01844 I 0.619
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.619
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.619
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.616
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.616
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.615
30190.m011307 Ricinus communis 30190.m011307 I 0.615
Si020949m.g Setaria italica Si020949m.g I 0.615
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.615
MDP0000288192 Malus domestica MDP0000288192 I 0.615
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.614
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.614
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.614
mgf006635m Mimulus guttatus mgf006635m I 0.613
TCM_029805 Theobroma cacao TCM_029805 I 0.611
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.611
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.611
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.607