Lus10013979.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10013979.g T228865_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.844 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013979 Homeodomain 47 103

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.855
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.854
MDP0000192108 Malus domestica MDP0000192108 I 0.854
MDP0000288192 Malus domestica MDP0000288192 I 0.854
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.854
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.854
Pm010098 Prunus mume Pm010098 I 0.854
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.854
Cla009803 Citrullus lanatus Cla009803 I 0.854
Ca_06343 Cicer arietinum Ca_06343 I 0.849
Ca_00337 Cicer arietinum Ca_00337 I 0.849
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.849
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.849
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.849
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.849
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.849
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.849
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.848
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.848
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.848
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.848
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.848
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.848
PK13272.1 Cannabis sativa PK13272.1 I 0.847
Bra032908 Brassica rapa Bra032908 I 0.847
Bo5g055970 Brassica oleracea Bo5g055970 I 0.846
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.845
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.845
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.845
RLT1 Arabidopsis thaliana AT1G28420 D 0.844
TCM_029805 Theobroma cacao TCM_029805 I 0.838
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.838
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.838
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.838
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.827
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.827
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.827
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.823
Bo3g143570 Brassica oleracea Bo3g143570 I 0.814
Bra010869 Brassica rapa Bra010869 I 0.814
mgf006858m Mimulus guttatus mgf006858m I 0.814
30190.m011307 Ricinus communis 30190.m011307 I 0.798
mgf006635m Mimulus guttatus mgf006635m I 0.795
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.777
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.712
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.676
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.676
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.676
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.676
29983.m003128 Ricinus communis 29983.m003128 I 0.675
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.675
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.675
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.675
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.675
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.675
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.674
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.674
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.674
OBART05G25730 Oryza barthii OBART05G25730 I 0.674
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.674
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.674
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.674
PK06068.1 Cannabis sativa PK06068.1 I 0.670
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.670
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.670
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.670
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.670
TCM_008214 Theobroma cacao TCM_008214 I 0.670
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.669
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.669
Ca_11272 Cicer arietinum Ca_11272 I 0.668
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.668
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.668
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.668
Bra033725 Brassica rapa Bra033725 I 0.667
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.662
RLT2 Arabidopsis thaliana AT5G44180 I 0.653
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.646
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
Si020949m.g Setaria italica Si020949m.g I 0.642
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.640
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.640
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.640
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.640
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.638
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.638
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.637
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.636
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.636
Si004333m.g Setaria italica Si004333m.g I 0.636
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.636
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.636
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.636
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.636
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.636
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.636
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.636
OS01G0672201 Oryza sativa OS01G0672201 I 0.636
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.636
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.636
OB01G35240 Oryza brachyantha OB01G35240 I 0.636
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.636
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.635
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.635
F775_01844 Aegilops tauschii F775_01844 I 0.635
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.632
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.614