Pavir.J20612 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J20612 T229350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.645 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J20612.1.p Homeodomain 49 105

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.867
Si020949m.g Setaria italica Si020949m.g I 0.866
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.864
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.864
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.839
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.818
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.818
OBART05G25730 Oryza barthii OBART05G25730 I 0.818
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.818
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.818
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.818
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.818
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.776
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.700
OB01G35240 Oryza brachyantha OB01G35240 I 0.700
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.700
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.700
Si004333m.g Setaria italica Si004333m.g I 0.700
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.699
F775_01844 Aegilops tauschii F775_01844 I 0.699
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.699
TCM_008214 Theobroma cacao TCM_008214 I 0.683
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.683
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.671
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.669
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.669
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.669
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.669
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.669
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.669
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.669
OS01G0672201 Oryza sativa OS01G0672201 I 0.669
Ca_11272 Cicer arietinum Ca_11272 I 0.669
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.657
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.655
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.655
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.655
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.650
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.650
29983.m003128 Ricinus communis 29983.m003128 I 0.650
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.650
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.650
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.650
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.650
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.650
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.650
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.650
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.650
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.649
Bo7g067190 Brassica oleracea Bo7g067190 I 0.648
Bra033725 Brassica rapa Bra033725 I 0.647
RLT1 Arabidopsis thaliana AT1G28420 D 0.645
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.645
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.645
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.645
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.645
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.645
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.645
Bo3g143570 Brassica oleracea Bo3g143570 I 0.643
Bo5g055970 Brassica oleracea Bo5g055970 I 0.643
Bra010869 Brassica rapa Bra010869 I 0.643
Bra032908 Brassica rapa Bra032908 I 0.643
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.642
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.642
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.642
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.642
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.642
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.642
Ca_00337 Cicer arietinum Ca_00337 I 0.642
Ca_06343 Cicer arietinum Ca_06343 I 0.642
Cla009803 Citrullus lanatus Cla009803 I 0.642
Pm010098 Prunus mume Pm010098 I 0.642
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.642
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.642
mgf006858m Mimulus guttatus mgf006858m I 0.642
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.642
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.642
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.642
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.642
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.642
MDP0000192108 Malus domestica MDP0000192108 I 0.642
MDP0000288192 Malus domestica MDP0000288192 I 0.642
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.642
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.642
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.641
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.641
PK13272.1 Cannabis sativa PK13272.1 I 0.640
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.638
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.638
PK06068.1 Cannabis sativa PK06068.1 I 0.638
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.636
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.636
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.636
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.636
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.636
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.636
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.631
TCM_029805 Theobroma cacao TCM_029805 I 0.626
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.626
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.626
mgf006635m Mimulus guttatus mgf006635m I 0.624
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.623
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.623
RLT2 Arabidopsis thaliana AT5G44180 I 0.620
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.620
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.620
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.619
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.619
30190.m011307 Ricinus communis 30190.m011307 I 0.618
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.614
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.614