Carubv10020140m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10020140m.g T228328_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.778 0.653
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.634 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.610 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.610 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.610 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.610 0.408
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.429
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.408
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.388
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020140m Homeodomain 357 408

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

1212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DDIT3 Bos taurus ENSBTAG00000031544 I 0.000
DDIT3 Callithrix jacchus ENSCJAG00000007243 I 0.000
ENSCSAG00000004816 Chlorocebus sabaeus ENSCSAG00000004816 I 0.000
DDIT3 Dasypus novemcinctus ENSDNOG00000017504 I 0.000
DDIT3 Equus caballus ENSECAG00000020535 I 0.000
DDIT3 Erinaceus europaeus ENSEEUG00000003634 I 0.000
DDIT3 Homo sapiens ENSG00000175197 D 0.000
DDIT3 Gorilla gorilla ENSGGOG00000001987 I 0.000
DDIT3 Loxodonta africana ENSLAFG00000030970 I 0.000
DDIT3 Microcebus murinus ENSMICG00000005434 I 0.000
DDIT3 Myotis lucifugus ENSMLUG00000001055 I 0.000
DDIT3 Macaca mulatta ENSMMUG00000011286 I 0.000
Ddit3 Mus musculus ENSMUSG00000025408 D 0.000
ENSNLEG00000017291 Nomascus leucogenys ENSNLEG00000017291 I 0.000
ENSOARG00000006500 Ovis aries ENSOARG00000006500 I 0.000
DDIT3 Otolemur garnettii ENSOGAG00000005231 I 0.000
DDIT3 Ochotona princeps ENSOPRG00000006529 I 0.000
ENSP00000340671 Macaca fascicularis ENSP00000340671 I 0.000
ENSP00000340671-D1 Bos grunniens ENSP00000340671-D1 I 0.000
ENSPANG00000024001 Papio anubis ENSPANG00000024001 I 0.000
DDIT3 Procavia capensis ENSPCAG00000016158 I 0.000
ENSPPYG00000004692 Pongo abelii ENSPPYG00000004692 I 0.000
DDIT3 Pteropus vampyrus ENSPVAG00000012114 I 0.000
DDIT3 Sorex araneus ENSSARG00000002536 I 0.000
ENSSSCG00000022482 Sus scrofa ENSSSCG00000022482 I 0.000
ENSSTOG00000019858 Ictidomys tridecemlineatus ENSSTOG00000019858 I 0.000
DDIT3 Tupaia belangeri ENSTBEG00000000521 I 0.000