Carubv10028333m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10028333m.g T228358_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA

TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.779 0.702
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW

WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.779 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028333m Homeodomain 11 72

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
2166_YBR297W Saccharomyces paradoxus 2166_YBR297W N
24510_Multiple Saccharomyces bayanus 24510_Multiple N
6782_Multiple Saccharomyces mikatae 6782_Multiple N
7166_YFL052W Saccharomyces paradoxus 7166_YFL052W N
8988_Multiple Saccharomyces mikatae 8988_Multiple I
9027_Multiple Saccharomyces mikatae 9027_Multiple N
9486_Multiple Saccharomyces paradoxus 9486_Multiple N
9504_Multiple Saccharomyces paradoxus 9504_Multiple N
9523_Multiple Saccharomyces paradoxus 9523_Multiple I
SKUD_144802 Saccharomyces kudriavzevii SKUD_144802 I
SKUD_184902 Saccharomyces kudriavzevii SKUD_184902 N
SKUD_188601 Saccharomyces kudriavzevii SKUD_188601 N
SKUD_188803 Saccharomyces kudriavzevii SKUD_188803 N
YFL052W Saccharomyces cerevisiae YFL052W N
MAL13 Saccharomyces cerevisiae YGR288W N