Gorai.003G142200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.003G142200 T228691_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G142200.1 Homeodomain 26 85

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN7_2125 Wickerhamomyces ciferrii BN7_2125 I 0.000
CANTEDRAFT_134781 Candida tenuis CANTEDRAFT_134781 I 0.000
CaO19.12215 Candida albicans CaO19.12215 I 0.000
CaO19.4752 Candida albicans CaO19.4752 D 0.000
CD36_08440 Candida dubliniensis CD36_08440 I 0.000
CLUG_01356 Clavispora lusitaniae CLUG_01356 I 0.000
CLUG_01356 Candida lusitaniae CLUG_01356 I 0.000
CORT_0A05380 Candida orthopsilosis CORT_0A05380 I 0.000
CPAG_03960 Candida parapsilosis CPAG_03960 N 0.000
CTRG_03253 Candida tropicalis CTRG_03253 I 0.000
DEHA2A08382g Debaryomyces hansenii DEHA2A08382g I 0.000
fgenesh1_pg.C_chr_7.1000062 Pichia stipitis fgenesh1_pg.C_chr_7.1000062 I 0.000
G210_5389 Candida maltosa G210_5389 I 0.000
GNLVRS01_PISO0E05768g Millerozyma farinosa GNLVRS01_PISO0E05768g I 0.000
KLLA0_F26961g Kluyveromyces lactis KLLA0_F26961g D 0.000
KLTH0D08734g Lachancea thermotolerans KLTH0D08734g I 0.000
KLTH0D08734g Kluyveromyces thermotolerans KLTH0D08734g I 0.000
Kwal_8351 Kluyveromyces waltii Kwal_8351 I 0.000
LALA0_S09e05358g Lachancea lanzarotensis LALA0_S09e05358g I 0.000
LELG_00530 Lodderomyces elongisporus LELG_00530 I 0.000
NCAS_0A12910 Naumovozyma castellii NCAS_0A12910 I 0.000
PGUG_01635 Meyerozyma guilliermondii PGUG_01635 I 0.000
PGUG_01635 Candida guilliermondii PGUG_01635 I 0.000
PICST_33273 Scheffersomyces stipitis PICST_33273 I 0.000
SAKL0B11330g Lachancea kluyveri SAKL0B11330g I 0.000
Scas_Contig709.32 Saccharomyces castellii Scas_Contig709.32 I 0.000
TPHA_0C02580 Tetrapisispora phaffii TPHA_0C02580 I 0.000