Gorai.009G331300 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G331300 T228781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.806 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.800 0.789
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.800 0.789
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.773 0.702
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.773 0.702
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.773 0.684
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.773 0.684
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.773 0.684
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.740 0.737
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.740 0.719
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.740 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G331300.1 Homeodomain 56 112

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011464 Calypte anna Aan_R011464 N 0.000
Alligator_sinensis_CCG016667.1 Alligator sinensis Alligator_sinensis_CCG016667.1 N 0.000
Cmyd_10010458 Chelonia mydas Cmyd_10010458 N 0.000
TRERF1 Anolis carolinensis ENSACAG00000001080 N 0.000
ENSAPLG00000014876 Anas platyrhynchos ENSAPLG00000014876 N 0.000
TRERF1 Bos taurus ENSBTAG00000015321 N 0.000
ENSBTAP00000020376-D1 Bos grunniens ENSBTAP00000020376-D1 N 0.000
TRERF1 Canis familiaris ENSCAFG00000001642 N 0.000
TRERF1 Choloepus hoffmanni ENSCHOG00000006120 N 0.000
TRERF1 Callithrix jacchus ENSCJAG00000004347 N 0.000
TRERF1 Cavia porcellus ENSCPOG00000015717 N 0.000
TRERF1 Equus caballus ENSECAG00000016971 N 0.000
ENSFALG00000012590 Ficedula albicollis ENSFALG00000012590 N 0.000
TRERF1 Felis catus ENSFCAG00000011210 N 0.000
TRERF1 Homo sapiens ENSG00000124496 N 0.000
TRERF1 Gorilla gorilla ENSGGOG00000012813 N 0.000
ENSLACG00000008926 Latimeria chalumnae ENSLACG00000008926 N 0.000
TRERF1 Loxodonta africana ENSLAFG00000007825 N 0.000
ENSLOCG00000017240 Lepisosteus oculatus ENSLOCG00000017240 N 0.000
TRERF1 Meleagris gallopavo ENSMGAG00000013894 N 0.000
TRERF1 Myotis lucifugus ENSMLUG00000016748 N 0.000
TRERF1 Monodelphis domestica ENSMODG00000019042 N 0.000
ENSMPUG00000013360 Mustela putorius furo ENSMPUG00000013360 N 0.000
ENSNLEG00000004772 Nomascus leucogenys ENSNLEG00000004772 N 0.000
TRERF1 Ornithorhynchus anatinus ENSOANG00000008467 N 0.000
ENSOARG00000003358 Ovis aries ENSOARG00000003358 N 0.000
TRERF1 Otolemur garnettii ENSOGAG00000025610 N 0.000
ENSP00000362013 Macaca fascicularis ENSP00000362013 N 0.000
ENSPANG00000009451 Papio anubis ENSPANG00000009451 N 0.000
ENSPPYG00000016614 Pongo abelii ENSPPYG00000016614 N 0.000
ENSPSIG00000009755 Pelodiscus sinensis ENSPSIG00000009755 N 0.000
TRERF1 Pteropus vampyrus ENSPVAG00000007626 N 0.000
Trerf1 Rattus norvegicus ENSRNOG00000022598 N 0.000
ENSSHAG00000004599 Sarcophilus harrisii ENSSHAG00000004599 N 0.000
TRERF1 Sus scrofa ENSSSCG00000001639 N 0.000
ENSSTOG00000022996 Ictidomys tridecemlineatus ENSSTOG00000022996 N 0.000
ENSTBEG00000012133 Tupaia belangeri ENSTBEG00000012133 N 0.000
TRERF1 Taeniopygia guttata ENSTGUG00000003250 N 0.000
ENSTSYG00000003874 Tarsius syrichta ENSTSYG00000003874 N 0.000
TRERF1 Tursiops truncatus ENSTTRG00000014065 N 0.000
Myotis_brandtii_Trerf1_10015386 Myotis brandtii Myotis_brandtii_Trerf1_10015386 N 0.000
Pvit_13408 Pogona vitticeps Pvit_13408 N 0.000
trerf1 Xenopus tropicalis XB-GENE-940630 N 0.000