Lus10005757.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10005757.g T228838_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.651 0.679
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.651 0.679
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.651 0.679
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.631 0.660
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.631 0.660
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.623 0.604
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.623 0.604
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.607 0.604
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.606 0.604
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.606 0.604
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.605 0.604
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.605 0.604
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.605 0.604
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.605 0.604
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.605 0.566
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10005757 Homeodomain 15 67

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

440 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003797 Calypte anna Aan_R003797 I
Aan_R007225 Calypte anna Aan_R007225 I
Afo_R002063 Aptenodytes forsteri Afo_R002063 I
Afo_R011673 Aptenodytes forsteri Afo_R011673 I
Alligator_sinensis_CCG002397.1 Alligator sinensis Alligator_sinensis_CCG002397.1 I
Alligator_sinensis_CCG004214.1 Alligator sinensis Alligator_sinensis_CCG004214.1 I
Alligator_sinensis_CCG020422.1 Alligator sinensis Alligator_sinensis_CCG020422.1 I
Brh_R005039 Buceros rhinoceros Brh_R005039 I
Brh_R009446 Buceros rhinoceros Brh_R009446 I
Cmyd_10010632 Chelonia mydas Cmyd_10010632 I
TFEB Anolis carolinensis ENSACAG00000002664 I
MITF Anolis carolinensis ENSACAG00000013586 I
TFE3 Anolis carolinensis ENSACAG00000022140 I
ENSAMEG00000012353 Ailuropoda melanoleuca ENSAMEG00000012353 I
ENSAMEG00000013103 Ailuropoda melanoleuca ENSAMEG00000013103 I
ENSAMEG00000017117 Ailuropoda melanoleuca ENSAMEG00000017117 I
ENSAMXG00000007343 Astyanax mexicanus ENSAMXG00000007343 I
ENSAMXG00000020781 Astyanax mexicanus ENSAMXG00000020781 I
ENSAPLG00000010269 Anas platyrhynchos ENSAPLG00000010269 I
ENSAPLG00000011965 Anas platyrhynchos ENSAPLG00000011965 I
MITF Bos taurus ENSBTAG00000006679 I
TFE3 Bos taurus ENSBTAG00000008523 I
TFEB Bos taurus ENSBTAG00000012384 I
ENSBTAP00000053693-D1 Bos grunniens ENSBTAP00000053693-D1 I
TFEB Canis familiaris ENSCAFG00000001599 I
MITF Canis familiaris ENSCAFG00000006496 I
TFE3 Canis familiaris ENSCAFG00000015765 I
TFEB Callithrix jacchus ENSCJAG00000004199 I
MITF Callithrix jacchus ENSCJAG00000013260 I
TFEB Cavia porcellus ENSCPOG00000008027 I
TFE3 Cavia porcellus ENSCPOG00000012410 I
MITF Cavia porcellus ENSCPOG00000014963 I
ENSCSAG00000011274 Chlorocebus sabaeus ENSCSAG00000011274 I
ENSCSAG00000011595 Chlorocebus sabaeus ENSCSAG00000011595 I
ENSCSAG00000013021 Chlorocebus sabaeus ENSCSAG00000013021 I
mitfa Danio rerio ENSDARG00000003732 I
tfeb Danio rerio ENSDARG00000010794 I
tfe3b Danio rerio ENSDARG00000019457 I
mitfb Danio rerio ENSDARG00000037833 I
tfe3a Danio rerio ENSDARG00000098903 I
MITF Dasypus novemcinctus ENSDNOG00000037006 I
TFE3 Dasypus novemcinctus ENSDNOG00000039173 I
Mitf Dipodomys ordii ENSDORG00000003336 I
ENSDORG00000013258 Dipodomys ordii ENSDORG00000013258 I
MITF Equus caballus ENSECAG00000005360 I
TFEB Equus caballus ENSECAG00000019762 I
TFE3 Equus caballus ENSECAG00000020642 I
MITF Erinaceus europaeus ENSEEUG00000005163 I
ENSFALG00000003097 Ficedula albicollis ENSFALG00000003097 I
ENSFALG00000013383 Ficedula albicollis ENSFALG00000013383 I
TFE3 Felis catus ENSFCAG00000002574 I
TFEB Felis catus ENSFCAG00000011521 I
MITF Felis catus ENSFCAG00000024419 I
TFE3 Homo sapiens ENSG00000068323 D
TFEB Homo sapiens ENSG00000112561 D
MITF Homo sapiens ENSG00000187098 D
mitfb Gasterosteus aculeatus ENSGACG00000003425 I
tfe3b Gasterosteus aculeatus ENSGACG00000010355 I
mitfa Gasterosteus aculeatus ENSGACG00000011875 I
ENSGALG00000003404 Gallus gallus ENSGALG00000003404 I
ENSGALG00000007679 Gallus gallus ENSGALG00000007679 I
TFEB Gorilla gorilla ENSGGOG00000002683 I
TFE3 Gorilla gorilla ENSGGOG00000014023 I
MITF Gorilla gorilla ENSGGOG00000024338 I
ENSGMOG00000007421 Gadus morhua ENSGMOG00000007421 I
ENSGMOG00000010175 Gadus morhua ENSGMOG00000010175 I
ENSGMOG00000018115 Gadus morhua ENSGMOG00000018115 I
ENSLACG00000011547 Latimeria chalumnae ENSLACG00000011547 I
ENSLACG00000013218 Latimeria chalumnae ENSLACG00000013218 I
TFEB Loxodonta africana ENSLAFG00000003059 I
MITF Loxodonta africana ENSLAFG00000023153 I
TFE3 Loxodonta africana ENSLAFG00000025585 I
ENSLOCG00000010058 Lepisosteus oculatus ENSLOCG00000010058 I
ENSLOCG00000012145 Lepisosteus oculatus ENSLOCG00000012145 I
ENSLOCG00000014691 Lepisosteus oculatus ENSLOCG00000014691 I
TFEB Meleagris gallopavo ENSMGAG00000006159 I
MITF Meleagris gallopavo ENSMGAG00000009507 I
ENSMICG00000002894 Microcebus murinus ENSMICG00000002894 I
TFE3 Microcebus murinus ENSMICG00000009708 I
TFEB Microcebus murinus ENSMICG00000015674 I
TFEB Myotis lucifugus ENSMLUG00000000232 I
MITF Myotis lucifugus ENSMLUG00000002587 I
TFE3 Myotis lucifugus ENSMLUG00000030217 I
MITF Macaca mulatta ENSMMUG00000002100 I
TFEB Macaca mulatta ENSMMUG00000004690 I
TFE3 Macaca mulatta ENSMMUG00000023494 I
ENSMMUP00000030934 Macaca fascicularis ENSMMUP00000030934 I
MITF Monodelphis domestica ENSMODG00000003754 I
ENSMPUG00000013594 Mustela putorius furo ENSMPUG00000013594 I
ENSMPUG00000013794 Mustela putorius furo ENSMPUG00000013794 I
ENSMPUG00000016972 Mustela putorius furo ENSMPUG00000016972 I
Tfe3 Mus musculus ENSMUSG00000000134 D
Tfeb Mus musculus ENSMUSG00000023990 D
Mitf Mus musculus ENSMUSG00000035158 D
ENSNLEG00000002357 Nomascus leucogenys ENSNLEG00000002357 I
ENSNLEG00000004906 Nomascus leucogenys ENSNLEG00000004906 I
ENSNLEG00000007963 Nomascus leucogenys ENSNLEG00000007963 I
ENSOANG00000012406 Ornithorhynchus anatinus ENSOANG00000012406 I
TFE3 Ornithorhynchus anatinus ENSOANG00000013574 I
TFEB Ornithorhynchus anatinus ENSOANG00000015438 I
ENSOARG00000002322 Ovis aries ENSOARG00000002322 I
ENSOARG00000009833 Ovis aries ENSOARG00000009833 I
ENSOARG00000011157 Ovis aries ENSOARG00000011157 I
MITF Oryctolagus cuniculus ENSOCUG00000002190 I
TFE3 Oryctolagus cuniculus ENSOCUG00000015807 I
TFEB Oryctolagus cuniculus ENSOCUG00000027474 I
MITF Otolemur garnettii ENSOGAG00000000043 I
TFEB Otolemur garnettii ENSOGAG00000010116 I
TFE3 Otolemur garnettii ENSOGAG00000031330 I
ENSONIG00000000820 Oreochromis niloticus ENSONIG00000000820 I
ENSONIG00000016952 Oreochromis niloticus ENSONIG00000016952 I
ENSONIG00000019306 Oreochromis niloticus ENSONIG00000019306 I
ENSONIG00000020270 Oreochromis niloticus ENSONIG00000020270 I
ENSONIG00000020291 Oreochromis niloticus ENSONIG00000020291 I
TFE3 Ochotona princeps ENSOPRG00000007735 I
mitfa Oryzias latipes ENSORLG00000003123 I
mitfb Oryzias latipes ENSORLG00000013461 I
tfe3b Oryzias latipes ENSORLG00000014134 I
ENSP00000338360-D1 Bos grunniens ENSP00000338360-D1 I
ENSP00000343948 Macaca fascicularis ENSP00000343948 I
ENSP00000343948-D1 Bos grunniens ENSP00000343948-D1 I
ENSP00000391803 Macaca fascicularis ENSP00000391803 I
ENSPANG00000009713 Papio anubis ENSPANG00000009713 I
ENSPANG00000011565 Papio anubis ENSPANG00000011565 I
ENSPANG00000013676 Papio anubis ENSPANG00000013676 I
TFE3 Procavia capensis ENSPCAG00000003945 I
ENSPFOG00000001499 Poecilia formosa ENSPFOG00000001499 I
ENSPFOG00000006677 Poecilia formosa ENSPFOG00000006677 I
ENSPFOG00000007171 Poecilia formosa ENSPFOG00000007171 I
ENSPFOG00000017022 Poecilia formosa ENSPFOG00000017022 I
ENSPMAG00000001002 Petromyzon marinus ENSPMAG00000001002 I
ENSPMAG00000004927 Petromyzon marinus ENSPMAG00000004927 I
ENSPMAG00000008619 Petromyzon marinus ENSPMAG00000008619 I
ENSPPYG00000013725 Pongo abelii ENSPPYG00000013725 I
ENSPPYG00000016599 Pongo abelii ENSPPYG00000016599 I
ENSPPYG00000029376 Pongo abelii ENSPPYG00000029376 I
ENSPSIG00000010995 Pelodiscus sinensis ENSPSIG00000010995 I
ENSPSIG00000012120 Pelodiscus sinensis ENSPSIG00000012120 I
MITF Pan troglodytes ENSPTRG00000015100 I
TFEB Pan troglodytes ENSPTRG00000018157 I
TFEB Pteropus vampyrus ENSPVAG00000007581 I
TFE3 Pteropus vampyrus ENSPVAG00000009435 I
Mitf Rattus norvegicus ENSRNOG00000008658 I
Tfe3 Rattus norvegicus ENSRNOG00000009605 I
Tfeb Rattus norvegicus ENSRNOG00000014666 I
TFE3 Sorex araneus ENSSARG00000000644 I
MITF Sorex araneus ENSSARG00000002538 I
ENSSHAG00000003327 Sarcophilus harrisii ENSSHAG00000003327 I
ENSSHAG00000009705 Sarcophilus harrisii ENSSHAG00000009705 I
ENSSHAG00000017522 Sarcophilus harrisii ENSSHAG00000017522 I
TFEB Sus scrofa ENSSSCG00000001621 I
TFE3 Sus scrofa ENSSSCG00000012287 I
ENSSTOG00000014237 Ictidomys tridecemlineatus ENSSTOG00000014237 I
ENSSTOG00000015338 Ictidomys tridecemlineatus ENSSTOG00000015338 I
MITF Tupaia belangeri ENSTBEG00000017713 I
MITF Taeniopygia guttata ENSTGUG00000009847 I
ENSTGUG00000017433 Taeniopygia guttata ENSTGUG00000017433 I
tfeb Tetraodon nigroviridis ENSTNIG00000007281 I
tfe3b Tetraodon nigroviridis ENSTNIG00000007324 I
mitfa Tetraodon nigroviridis ENSTNIG00000007360 I
mitfb Tetraodon nigroviridis ENSTNIG00000012564 I
tfeb Takifugu rubripes ENSTRUG00000000653 I
mitfa Takifugu rubripes ENSTRUG00000001600 I
tfe3a Takifugu rubripes ENSTRUG00000005584 I
mitfb Takifugu rubripes ENSTRUG00000012080 I
tfe3b Takifugu rubripes ENSTRUG00000013198 I
ENSTSYG00000011324 Tarsius syrichta ENSTSYG00000011324 I
MITF Tursiops truncatus ENSTTRG00000007072 I
TFE3 Tursiops truncatus ENSTTRG00000009064 I
ENSTTRG00000016385 Tursiops truncatus ENSTTRG00000016385 I
ENSXMAG00000002200 Xiphophorus maculatus ENSXMAG00000002200 I
ENSXMAG00000003547 Xiphophorus maculatus ENSXMAG00000003547 I
ENSXMAG00000003856 Xiphophorus maculatus ENSXMAG00000003856 I
ENSXMAG00000007656 Xiphophorus maculatus ENSXMAG00000007656 I
ENSXMAG00000016472 Xiphophorus maculatus ENSXMAG00000016472 I
Gfo_R002984 Geospiza fortis Gfo_R002984 I
Gfo_R014572 Geospiza fortis Gfo_R014572 I
Myotis_brandtii_Mitf_10022588 Myotis brandtii Myotis_brandtii_Mitf_10022588 I
Myotis_brandtii_TFE3_10010865 Myotis brandtii Myotis_brandtii_TFE3_10010865 I
Myotis_brandtii_TFEB_10015405 Myotis brandtii Myotis_brandtii_TFEB_10015405 I
Ogr06907 Ophisaurus gracilis Ogr06907 I
Pvit_00330 Pogona vitticeps Pvit_00330 I
Pvit_01233 Pogona vitticeps Pvit_01233 I
Pvit_06044 Pogona vitticeps Pvit_06044 I
Tal_R001329 Tyto alba Tal_R001329 I
Tal_R006591 Tyto alba Tal_R006591 I
mitf Xenopus tropicalis XB-GENE-484962 I
tfe3.S Xenopus laevis XB-GENE-5918226 I
mitf.L Xenopus laevis XB-GENE-6252679 I
mitf.S Xenopus laevis XB-GENE-6464338 I